Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001507.1 Corchorus capsularis cultivar CVL-1 contig01507, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33


Found at i:134 original size:19 final size:19

Alignment explanation


    Indices: 106--143  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

         96 CTACAATGTA

                 *             
        106 TCAAATAAGAACAGATACT
          1 TCAAACAAGAACAGATACT

                               
        125 TCAAACAAGAACAGATACT
          1 TCAAACAAGAACAGATACT

        144 AAAGAGTTAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18


Consensus pattern (19 bp):   
TCAAACAAGAACAGATACT
Done.