Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015070.1 Corchorus capsularis cultivar CVL-1 contig15091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73218

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
629--654
2
13.0
2
100
0
52
50
0
0
50
1.00
1373--1785
156
2.6
156
82
6
507
31
15
19
33
1.93
2100--2154
28
2.0
28
89
7
85
25
18
25
30
1.98
2386--2431
23
2.0
23
87
4
67
10
34
13
41
1.79
2999--3033
2
17.5
2
100
0
70
0
48
0
51
1.00
8564--8589
11
2.4
11
100
0
52
42
15
7
34
1.75
8780--8838
22
2.7
21
84
5
64
45
11
8
33
1.71
10972--11013
19
2.2
20
87
8
61
19
2
7
71
1.20
11304--11336
4
8.2
4
100
0
66
24
0
0
75
0.80
11335--11366
3
10.7
3
100
0
64
34
31
0
34
1.58
17977--18026
21
2.4
21
82
0
64
4
40
2
54
1.31
26827--26853
14
1.9
14
100
0
54
51
0
14
33
1.43
32899--32931
10
3.7
9
88
12
50
0
12
0
87
0.53
39191--39247
28
2.0
28
100
0
114
42
24
15
17
1.88
41852--41936
37
2.2
38
85
4
109
61
10
14
14
1.57
42050--42115
31
2.1
32
88
5
100
46
6
18
28
1.72
42185--42227
19
2.2
20
84
16
54
62
2
6
27
1.33
42526--42603
31
2.5
31
85
8
95
48
5
15
30
1.66
44355--44440
40
2.2
40
100
0
172
38
9
9
43
1.69
44853--44885
17
2.0
17
88
5
50
36
0
0
63
0.95
46610--46672
31
2.1
30
88
5
92
34
19
7
38
1.81
46555--46704
76
2.0
76
98
0
291
40
14
8
36
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46554--46642
45
1.9
47
86
6
128
42
15
6
34
1.74
47258--47340
26
3.4
25
83
16
111
49
7
6
37
1.55
47274--47330
22
2.6
22
97
0
105
49
8
3
38
1.51
47440--47496
14
3.9
15
86
9
82
45
0
8
45
1.34
47442--47496
23
2.5
22
88
11
85
45
0
9
45
1.35
47440--47496
2
26.0
2
83
16
69
45
0
8
45
1.34
49587--49642
26
2.2
26
93
0
94
30
26
5
37
1.79
50599--51507
199
4.5
198
84
3
1074
34
13
17
35
1.88
61713--61746
2
17.0
2
93
0
59
47
50
2
0
1.16
63261--65602
199
11.8
198
84
4
2781
34
13
17
34
1.89
68861--68886
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!