genome.fa.s15072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015072.1 Corchorus capsularis cultivar CVL-1 contig15093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99017

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164--196	2	16.5	2	100	0	66	48	0	0	51	1.00
1233--1261	3	9.7	3	100	0	58	68	0	0	31	0.89
17766--17795	14	2.2	14	94	5	53	80	0	20	0	0.72
25965--26056	38	2.4	38	78	1	105	14	42	19	23	1.88
26385--26409	3	8.3	3	100	0	50	64	0	0	36	0.94
27612--27679	17	4.0	17	96	0	127	22	35	13	29	1.92
27612--27672	7	7.0	10	66	30	50	21	36	13	29	1.91
27747--27826	27	3.0	27	90	0	115	17	18	23	40	1.91
30585--31113	51	10.5	51	85	5	650	41	4	16	37	1.70
31480--31515	11	3.2	11	84	7	54	0	16	38	44	1.48
31481--31516	12	3.1	12	88	4	56	0	16	36	47	1.47
32782--33078	26	10.9	26	64	23	105	51	6	17	25	1.68
32778--33130	55	6.5	55	92	1	566	50	6	17	25	1.69
32778--33130	109	3.2	110	91	1	575	50	6	17	25	1.69
32778--33120	164	2.1	164	93	1	580	51	6	17	25	1.69
32981--33056	20	4.2	18	68	29	54	52	6	13	27	1.64
33115--33233	41	2.9	41	79	10	154	48	6	18	26	1.72
32834--33165	109	3.0	105	79	11	309	50	6	17	25	1.71
33204--33297	37	2.7	35	80	11	111	43	7	19	29	1.78
33568--33624	21	2.7	21	78	10	80	45	5	29	19	1.72
33612--33666	22	2.6	20	83	13	74	52	0	23	23	1.47
33559--33687	43	3.0	43	82	6	140	50	4	25	19	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33615--33788	7	24.4	7	65	13	61	54	2	23	19	1.55
33676--33756	34	2.3	35	87	2	110	56	2	23	17	1.52
33634--33764	35	3.8	34	78	5	129	54	3	22	19	1.57
33798--34032	22	10.8	21	66	19	101	56	2	20	19	1.55
33816--33986	44	3.7	46	78	11	127	54	2	22	20	1.58
33902--34032	22	6.0	22	74	10	106	58	2	20	19	1.51
33901--34024	44	2.8	44	90	2	187	56	2	20	20	1.53
34005--34084	14	5.6	14	77	11	81	57	2	21	18	1.52
33912--34084	22	8.2	21	70	10	77	58	2	20	19	1.50
34844--34897	22	2.5	22	100	0	108	24	24	20	31	1.98
36968--37005	15	2.5	15	79	12	51	78	0	21	0	0.74
39594--39749	53	2.9	53	89	0	258	46	9	18	25	1.79
39594--39908	89	3.2	103	73	18	322	45	10	18	25	1.81
39730--39889	53	3.0	51	82	5	176	48	10	20	20	1.78
39789--39877	29	3.2	28	64	20	71	44	12	17	24	1.83
39605--39885	142	2.0	142	88	0	418	46	11	19	23	1.81
40102--40251	32	4.6	33	73	18	100	55	4	26	14	1.58
40191--40300	32	3.2	35	81	12	97	54	6	25	13	1.62
40206--40306	32	3.2	32	86	0	139	54	6	23	14	1.65
40159--40306	64	2.3	64	81	4	156	54	5	25	14	1.61
40293--40370	9	8.7	9	85	5	113	57	0	30	11	1.34
40293--40379	45	1.9	45	90	4	140	56	1	29	12	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60018--60078	30	2.0	30	90	6	97	21	32	16	29	1.95
61366--61407	17	2.5	17	100	0	84	28	9	11	50	1.70
63805--63875	27	2.6	27	71	13	72	16	21	0	61	1.34
63817--63875	27	2.1	28	87	3	84	16	23	0	59	1.37
63995--64042	14	3.4	14	88	5	78	22	14	6	56	1.61
64016--64095	21	3.8	22	78	18	80	21	17	6	55	1.64
64252--64295	22	1.9	24	90	9	74	31	20	4	43	1.72
64372--64611	55	4.3	55	89	2	347	24	18	7	49	1.74
68165--68240	27	2.8	27	87	0	107	44	21	15	18	1.86
71934--72102	31	5.6	30	71	13	141	33	17	19	28	1.95
71937--72101	60	2.8	60	90	3	253	33	17	19	29	1.95
72133--72293	31	5.3	30	69	11	114	27	18	18	36	1.94
72133--72293	60	2.7	60	87	1	225	27	18	18	36	1.94
73199--73238	3	13.3	3	89	0	62	30	2	2	65	1.19
75193--75266	27	2.7	27	95	0	130	47	24	10	17	1.79
77782--78183	156	2.6	156	78	8	410	30	15	20	33	1.93
78478--78510	17	1.9	17	100	0	66	18	36	18	27	1.94
80468--80536	33	2.1	33	83	8	86	55	4	14	26	1.58
81295--81680	202	1.9	202	96	1	720	32	23	19	25	1.97
82359--82400	11	3.8	11	93	6	68	38	0	19	42	1.51
82359--82417	11	5.8	10	84	13	59	40	0	22	37	1.54
83763--83795	6	5.7	6	92	3	50	33	0	9	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87979--88020	20	2.1	20	86	0	57	14	23	19	42	1.87
93642--93683	20	2.1	20	86	0	57	14	23	19	42	1.87
95543--95582	14	2.9	14	92	3	64	50	10	0	40	1.36
95550--95588	19	1.9	19	85	10	51	48	7	0	43	1.31
95548--95588	14	2.9	15	86	13	52	48	7	0	43	1.30
97952--98009	30	1.9	30	85	0	80	17	27	27	27	1.97

Tables:   1

The End!