Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015074.1 Corchorus capsularis cultivar CVL-1 contig15095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81553

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6893--6932
18
2.2
18
86
4
53
22
5
2
70
1.19
7090--7135
24
1.9
24
81
0
56
52
8
4
34
1.52
10206--10260
28
2.0
28
81
0
65
29
10
20
40
1.86
10502--10589
43
2.1
42
86
2
122
39
4
17
38
1.70
10647--11504
37
23.2
37
76
5
795
44
15
16
22
1.85
10644--11519
74
11.9
74
89
3
1237
44
15
17
22
1.86
14465--14504
17
2.4
16
87
4
53
2
17
0
80
0.83
14750--14801
14
3.6
14
82
14
54
30
9
11
48
1.72
14764--14801
14
2.6
14
91
4
58
28
7
13
50
1.69
14869--14922
21
2.6
20
80
13
65
5
12
0
81
0.85
21012--21129
16
7.4
16
83
6
143
10
21
36
32
1.87
21029--21129
9
12.8
8
70
23
63
8
21
37
31
1.85
21012--21144
32
4.2
32
81
6
148
10
21
36
31
1.88
21010--21129
48
2.5
47
85
6
163
10
20
35
33
1.86
21591--21638
21
2.3
21
88
0
78
56
4
10
29
1.52
21746--21856
16
6.9
16
74
8
91
10
20
34
34
1.88
21746--21856
32
3.5
31
83
4
116
10
20
34
34
1.88
21753--21863
48
2.3
48
77
9
118
11
21
34
32
1.90
30129--30196
11
6.3
11
80
10
68
77
14
2
4
1.04
30154--30187
6
5.7
6
86
13
52
85
14
0
0
0.60
32758--32836
42
1.9
41
87
7
115
40
12
7
39
1.72
32756--32855
42
2.4
42
78
13
107
43
10
8
39
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36053--36713
30
21.7
30
88
2
739
29
17
18
34
1.94
36053--36709
183
3.6
183
95
1
1142
29
17
18
34
1.94
36647--36788
71
2.0
72
86
8
200
27
14
21
35
1.93
38279--38359
25
3.3
25
64
19
71
29
22
2
45
1.65
38281--38376
48
2.0
48
100
0
192
25
25
4
45
1.71
38777--38803
1
27.0
1
100
0
54
0
0
0
100
0.00
40478--40525
26
1.9
26
83
8
64
45
0
0
54
0.99
42688--42726
12
3.2
12
82
13
53
15
33
20
30
1.94
45882--45907
10
2.6
10
100
0
52
50
19
7
23
1.73
46811--46845
13
2.7
13
95
0
61
20
11
8
60
1.57
51081--51120
12
3.3
12
85
0
53
12
32
25
30
1.92
55712--55753
22
1.9
22
85
0
57
42
11
11
33
1.78
56009--56289
90
3.1
90
93
1
447
31
26
16
25
1.96
56313--56502
48
4.0
47
84
4
247
36
20
23
18
1.95
56313--56500
96
2.0
96
87
4
272
36
20
23
19
1.95
56613--56795
70
2.6
69
86
2
251
29
20
25
24
1.99
57937--57981
20
2.2
20
84
4
54
66
8
8
15
1.43
59306--59352
19
2.5
20
79
10
53
29
19
10
40
1.85
64003--64047
20
2.2
20
84
4
54
66
8
8
15
1.43
65379--65412
11
3.1
11
82
0
50
41
17
2
38
1.65
66706--66739
9
4.0
9
85
14
54
0
23
0
76
0.79
67371--67437
27
2.5
28
85
4
84
35
11
7
44
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67378--67428
14
3.8
13
84
7
66
37
7
7
47
1.62
68717--68797
39
2.0
40
88
2
119
43
9
20
25
1.83
71342--71407
27
2.4
27
92
7
116
15
19
25
39
1.91
72262--72359
27
3.6
27
91
5
162
35
23
22
18
1.95
75371--75412
22
1.9
22
85
0
57
42
11
11
33
1.78

Tables:   1

The End!