Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015075.1 Corchorus capsularis cultivar CVL-1 contig15096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33924

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2299--3072
399
1.9
398
91
2
1250
24
31
19
24
1.98
7161--7209
21
2.3
21
82
6
55
40
16
28
14
1.87
13497--13856
22
16.5
22
70
18
102
17
20
7
55
1.66
13509--13846
42
7.7
42
76
11
245
16
20
7
55
1.65
13553--13672
36
3.4
34
70
19
102
14
20
7
58
1.60
13708--13785
14
5.7
13
70
10
57
17
20
2
58
1.50
13823--13869
22
2.1
22
84
0
58
23
23
2
51
1.59
14082--14312
55
4.3
54
77
10
249
25
17
5
50
1.68
14186--14280
50
1.9
50
82
4
120
26
17
4
51
1.64
15003--15255
50
5.1
48
75
12
174
36
15
5
43
1.68
15053--15238
51
3.7
50
82
3
257
37
13
3
45
1.61
15040--15289
100
2.5
100
85
6
355
37
14
4
43
1.67
20719--20763
13
3.5
13
79
11
56
31
0
13
55
1.38
22436--22483
19
2.5
19
89
0
69
52
27
12
8
1.67
23131--23172
15
2.8
15
78
7
50
0
57
0
42
0.99
26514--26583
28
2.5
29
79
6
81
17
11
24
47
1.80
28483--28515
16
2.0
17
88
5
50
6
48
0
45
1.27
32320--32404
40
2.1
42
91
4
138
42
10
12
34
1.78
32329--32431
40
2.7
40
87
4
140
44
11
16
27
1.82
33832--33867
19
1.9
19
88
5
56
58
0
0
41
0.98
33832--33871
16
2.5
15
84
15
53
57
0
0
42
0.98

Tables:   1

The End!