Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015077.1 Corchorus capsularis cultivar CVL-1 contig15098, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4005
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.35


Found at i:3532 original size:12 final size:13

Alignment explanation


    Indices: 3491--3535  Score: 65
    Period size: 13  Copynumber: 3.5  Consensus size: 13

       3481 AATTATTGTT

                         
       3491 TGCTTTATTAATC
          1 TGCTTTATTAATC

              *         *
       3504 TGTTTTATTAATT
          1 TGCTTTATTAATC

                         
       3517 TGCTTTA-TAATC
          1 TGCTTTATTAATC

                   
       3529 TGCTTTA
          1 TGCTTTA

       3536 GATTTAGACT


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  12   11  0.39
  13   17  0.61

ACGTcount: A:0.22, C:0.11, G:0.09, T:0.58


Consensus pattern (13 bp):   
TGCTTTATTAATC

Found at i:3543 original size:6 final size:6

Alignment explanation


    Indices: 3532--3570  Score: 69
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       3522 TATAATCTGC

                          *                              
       3532 TTTAGA TTTAGA CTTAGA TTTAGA TTTAGA TTTAGA TTT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT

       3571 GCTTTGCTTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   31  1.00

ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51


Consensus pattern (6 bp):   
TTTAGA

Done.