Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015079.1 Corchorus capsularis cultivar CVL-1 contig15100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91956

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14345--14388
21
2.1
21
83
8
54
18
31
9
40
1.81
14436--14662
33
6.9
33
87
4
298
15
40
32
11
1.84
14726--14787
33
1.9
33
93
3
108
9
33
43
12
1.76
15473--15511
13
3.2
13
85
10
55
61
0
0
38
0.96
15574--15617
21
2.0
22
91
4
72
31
13
2
52
1.53
38283--38831
22
25.2
22
68
13
187
35
15
10
38
1.81
38594--38656
23
2.8
23
92
2
101
39
20
4
34
1.74
38282--38823
44
12.5
44
70
8
270
35
15
10
38
1.81
41231--41416
22
8.5
22
73
8
155
32
15
9
43
1.78
41605--41917
22
14.1
22
72
12
142
38
17
8
36
1.80
41731--41917
90
2.1
87
81
5
205
39
15
8
37
1.77
41605--41898
44
6.6
44
71
13
185
37
17
8
35
1.81
42569--42615
17
2.7
17
78
12
51
59
2
0
38
1.09
44341--44416
40
1.9
40
94
0
134
36
11
14
36
1.83
59461--59495
15
2.2
16
90
5
54
48
5
2
42
1.41
61343--61542
103
1.9
103
92
2
339
28
12
25
34
1.92
65652--65978
96
3.4
97
89
2
480
39
15
16
27
1.90
70345--70386
22
1.9
22
95
0
75
40
28
19
11
1.87
72977--73005
15
1.9
15
100
0
58
6
6
20
65
1.40
76202--76309
54
2.0
55
94
1
191
50
15
5
27
1.66
76482--76539
23
2.4
25
91
5
93
43
5
24
27
1.75
76496--76549
23
2.3
23
83
0
72
42
3
24
29
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79126--79217
46
2.0
46
100
0
184
30
23
8
36
1.85
80087--80214
68
1.9
68
88
3
195
24
25
17
32
1.97
80175--80411
110
2.2
110
89
2
352
22
21
22
33
1.97
80415--80517
29
3.4
29
73
12
107
31
26
14
28
1.95
80413--80608
63
3.0
67
88
5
269
32
25
15
26
1.96
80921--81076
49
3.2
48
87
2
208
22
8
26
42
1.82
81155--81604
45
9.8
45
73
14
253
29
26
15
28
1.96
81279--81481
102
2.0
102
96
0
370
33
27
12
26
1.93
81397--81642
45
5.4
45
82
5
239
28
24
17
30
1.97
81718--81814
51
1.9
50
85
2
131
24
23
16
35
1.95
81910--81987
27
2.9
27
86
1
93
16
20
23
39
1.92
86121--86145
12
2.1
12
100
0
50
48
0
0
52
1.00
87415--87441
13
2.1
13
100
0
54
29
14
22
33
1.94
87543--87583
21
2.0
21
90
0
64
31
34
7
26
1.84
87782--87843
31
2.0
31
87
6
90
51
4
16
27
1.64
87994--88028
3
11.7
3
100
0
70
34
0
0
65
0.93
88875--88932
26
2.2
26
78
0
62
31
15
27
25
1.96
89142--89187
20
2.2
21
92
3
76
26
4
19
50
1.66
91092--91123
16
2.0
16
93
0
55
0
15
37
46
1.46

Tables:   1

The End!