Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015084.1 Corchorus capsularis cultivar CVL-1 contig15105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12891
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Found at i:951 original size:455 final size:454
Alignment explanation
Indices: 1--3788 Score: 4549
Period size: 456 Copynumber: 8.4 Consensus size: 454
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
*
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTGAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
** * *
131 GAGAGTAGTACTAGGATTCGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCATTCTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
196 TCTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGT
196 TCTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGT
261 CTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGT
261 CTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGT
*
326 CGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTAT
326 CGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTT
391 TTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGT
391 TTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGT
* * *
455 TGGCAACAATGCACTGGATCCAATGAGATGTAGCTTGTATAGATTCATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* *
520 GTGTGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
* * * *
585 GACAGTAGTACTTGGATGGGTGACC-CTCTGAGAAGTCCTCGTGTTGCA-CCTTTTTTCATTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTC-CTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
648 TTCTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACG
195 TTCTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACG
713 TCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGG
260 TCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGG
778 TCCGTTTATGTTCGCTCGGTAAGGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
325 T-CGTTTATGTTCGCTCGGTAA-GGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
843 TTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
388 TTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
908 GT
453 GT
* * *
910 TGGCAACAATGCACCGGATCCAATGAGATCTGGCTTGTATAGATTTATCATGCAATGACCAATTG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* * ** *
975 GTGCGATCATTCCAGCACTAATGCTCCGGATTACATCAGAACTCCGCGGTTAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
* ****
1040 GAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCAAATGTTTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
* * *
1105 TCTTTAAATTTTCTTCTACTTTCGGAATTTCTAATGGGAAGAAATCGGTTCGTGTAAGCATTACG
196 TCTTT-AATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACG
* * *
1170 TCTTACTGTGGCTGCGAATGAACAACATGTTCGATGAACGGCATGTGAACAAGCTGGATCAAAGG
260 TCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGG
1235 TCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTT
325 TCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTT
1300 TTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGT
390 TTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGT
* * * *
1365 TGGCAACAATGCACCGGATCCAATTAGATGTGGTTTGTATAGATTTATCATTCAAAGACCGATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
** * * * *
1430 GTGCGATCATAAAAGCACTAATGTAACGGATCCCATCAGAACTCCGCAGTTAAGTGTGCCTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
*
1495 GAGAGTAGTACTAGGATGTGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCA-TTTTT
1560 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
195 TTC-TTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
1625 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
259 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
1690 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
324 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
* *
1755 TTTTGGGTAGTCATTGGTTGAAGTAAGTATTAAATCTTAGTACGTATGGCGTATACGATCATATG
389 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
1820 T
454 T
* *
1821 TGGCAACAATGCACCGAATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAGAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* * * *
1886 GTGCGATCATACCTGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTTAAGTGTTCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
* *
1951 GAGAGTAGTACTAGGATTGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCCTTTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCA-TTTTT
2016 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
195 TTC-TTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
2081 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
259 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
*
2146 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGTGAAATAATTTTTTCTTCTTCTTTCGAAAATT
324 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
* *
2211 TTTTGGGTAGTCATTGGTTGAAGTAAGTATTAAATCTTAGTACGTATGGCGTATACGATCATATG
389 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
2276 T
454 T
* * * *
2277 TGGCAACAATGCACCGAATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAAACCTATTG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
*
2342 GTGCGATCATACCAGCACTAATGCACCCGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
** * *** * **** *** * * *** *
2407 GAGAGTCCCCT-TTTTCAT--TTTTTTTCCTTTTAA-T--T-TTCTT-CTA---CTTTCGGAATT
131 GAGAGT--AGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC-ACCCCTTTTTCATTT
* * ** *** * ** * * *
2461 TCTTATGGGAAGCAATCGGTTC-A-TGTAAGCATTACGTCTTAGTATGGCTGCGAATGAAACACA
193 TTTTCT-TTAA-TTTTC--TTCTACTTTCGGAATT---TC-T--TAT-G--G-GAA-GCAA-TC-
* *** * ** * * ** * ** *
2524 TGTTCGATG-AA-CGGCACG--TGAACA-AGCTG-G-AT-CA-AAGGTCGTT-TATGTTC-GCTC
241 GGTTC-ATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACAT-GTTCGATGAACGGCAC
* ** *** * * * **
2578 G-G--TAAG--GTTTCCAAAGAGAAATATTTTTTTC-TTC--T--TCTTT-C---GA-AAACT--
304 GTGAACAAGCTGGAT-CAAAG-GTCGT-TTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAA-TAA
* ** * * * ** ** * * * * *
2626 TTTTGGGTAGTCATCGGTT-GAAATAAGTATTAAGTCTTAGTACATATGG-CGTA-TACG-ATCA
365 TTTT--TTCTTCTTC-TTTCG-AA-AA-TTTTTTG-GGTAGT-CAT-CGGTTGAAGTAAGTATTA
* * * * * * * * * *
2687 TA-TGTTGGCAAC-AATGCACCGGATCCAATGAGATG-
421 -AGTCTTAG-TACGTATG--GCGTATACGATCATATGT
* * * * * * * * *
2722 TGGCTTGTATAGATTCATC--ATCCAAAGACCAATG-GG--TG---CG----ATCATAC-CAGCA
1 TGGC---AACA-ATGCACCGGATCCAATGA--GATGTGGCTTGTATAGATTTATCATGCAAAG-A
* *** ** * * * ** * ** **
2774 CTAAT-GCACCGGATCCCATCAGAACTACT-CA---G-T-TAAGC-GTGCTTGGGC-G--AGAGT
59 CCAATGGGTGC-GATCATACCAGCACTAATGCACCGGATCCCATCAGAAC-TCCGCAGTTA-AG-
* * * ** ** * * * * * * * *
2828 AGTACTAGGATG-G-GT-G-ACCT--CCTGGGAAGTCCTCGTGTTGCA--CC-CCTTTTTCA---
120 CGTGCTTGGGCGAGAGTAGTA-CTAGGATGGG-TGACCTCCTG-GGAAGTCCTCGTGTTGCACCC
*
2881 ---TTT--TTTTTCT-TTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCA
182 CTTTTTCATTTTTTTCTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCA
2940 TGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAA
247 TGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAA
3005 GCTGGATCAAAGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTT
312 GCTGGATCAAAGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTT
*
3070 CTTTCGAAAATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGACGTA
377 CTTTCGAAAATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTA
3135 TACGATCATATGT
442 TACGATCATATGT
3148 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
*
3213 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTGAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
** *
3278 GAGAGTAGTACTAGGATTCGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCATTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCA-TTTTT
3343 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
195 TTC-TTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
* *
3408 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGAACATGAACAAGCTGGATCAAAG
259 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
*
3473 GCCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAA-TTTTTCTTCTTCTTTCGAAAATT
324 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
*
3537 AGTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
389 -TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
3602 GT
453 GT
3604 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* *
3669 GTGCGATCATACCAGCACTAATGCACCGGATTCCATCAGAACTCCGCAGTTAAACGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
*
3734 GAGAGTAGTACTAGGATGGGTGGCCTCCTGGGAAGTCCTCGTGTTGCACCCCTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTT
3789 CGGAATTTCT
Statistics
Matches: 2832, Mismatches: 352, Indels: 298
0.81 0.10 0.09
Matches are distributed among these distances:
409 3 0.00
410 6 0.00
411 5 0.00
412 3 0.00
413 6 0.00
414 5 0.00
415 1 0.00
416 3 0.00
417 7 0.00
418 7 0.00
419 5 0.00
420 3 0.00
421 9 0.00
422 16 0.01
423 17 0.01
424 15 0.01
425 19 0.01
426 23 0.01
427 15 0.01
428 5 0.00
429 8 0.00
430 14 0.00
431 10 0.00
432 39 0.01
433 11 0.00
434 1 0.00
435 1 0.00
436 1 0.00
437 1 0.00
438 10 0.00
439 37 0.01
440 6 0.00
441 11 0.00
442 9 0.00
443 11 0.00
444 19 0.01
445 23 0.01
446 19 0.01
447 21 0.01
448 22 0.01
449 16 0.01
450 10 0.00
451 10 0.00
452 6 0.00
453 151 0.05
454 199 0.07
455 574 0.20
456 1265 0.45
457 130 0.05
458 7 0.00
459 3 0.00
460 5 0.00
461 6 0.00
462 3 0.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (454 bp):
TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
TCTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGT
CTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGT
CGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTT
TTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGT
Found at i:2256 original size:912 final size:912
Alignment explanation
Indices: 1--8463 Score: 13498
Period size: 912 Copynumber: 9.4 Consensus size: 912
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
*
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTGAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
** * *
131 GAGAGTAGTACTAGGATTCGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCATTCTCA-TTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
195 TTC-TTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
196 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
259 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
261 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
324 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
326 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
*
389 ATTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
391 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
* * *
454 TTGGCAACAATGCACTGGATCCAATGAGATGTAGCTTGTATAGATTCATCATGCAAAGACCAATG
456 TTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATG
* *
519 GGTGTGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCGTGCTTGGG
521 GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
* * * *
584 CGACAGTAGTACTTGGATGGGTGACC-CTCTGAGAAGTCCTCGTGTTGCA-CCTTTTTTCA-TTT
586 CGAGAGTAGTACTAGGATGGGTGACCTC-CTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTT
646 TTTTC-TTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATT
650 TTTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATT
710 ACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAA
715 ACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAA
775 AGGTCCGTTTATGTTCGCTCGGTAAGGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAA
780 AGGT-CGTTTATGTTCGCTCGGTAA-GGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAA
840 AATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCA
843 AATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCA
905 TATGT
908 TATGT
* * *
910 TGGCAACAATGCACCGGATCCAATGAGATCTGGCTTGTATAGATTTATCATGCAATGACCAATTG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* * ** *
975 GTGCGATCATTCCAGCACTAATGCTCCGGATTACATCAGAACTCCGCGGTTAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
* ****
1040 GAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCAAATGTTTTTCA-TTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
* * * *
1104 TTCTTTAAATTTTCTTCTACTTTCGGAATTTCTAATGGGAAGAAATCGGTTCGTGTAAGCATTAC
196 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
* * *
1169 GTCTTACTGTGGCTGCGAATGAACAACATGTTCGATGAACGGCATGTGAACAAGCTGGATCAAAG
261 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
1234 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
326 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
1299 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
391 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
* * * *
1364 TTGGCAACAATGCACCGGATCCAATTAGATGTGGTTTGTATAGATTTATCATTCAAAGACCGATG
456 TTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATG
** * * * *
1429 GGTGCGATCATAAAAGCACTAATGTAACGGATCCCATCAGAACTCCGCAGTTAAGTGTGCCTGGG
521 GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
*
1494 CGAGAGTAGTACTAGGATGTGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
586 CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
1559 TTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
651 TTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
1624 CGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAA
716 CGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAA
1689 GGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
781 GGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
* *
1754 TTTTTGGGTAGTCATTGGTTGAAGTAAGTATTAAATCTTAGTACGTATGGCGTATACGATCATAT
846 TTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
1819 GT
911 GT
* *
1821 TGGCAACAATGCACCGAATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAGAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* * * *
1886 GTGCGATCATACCTGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTTAAGTGTTCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
* *
1951 GAGAGTAGTACTAGGATTGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCCTTTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
2016 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
196 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
2081 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
261 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
*
2146 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGTGAAATAATTTTTTCTTCTTCTTTCGAAAATT
326 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
* *
2211 TTTTGGGTAGTCATTGGTTGAAGTAAGTATTAAATCTTAGTACGTATGGCGTATACGATCATATG
391 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
* * * *
2276 TTGGCAACAATGCACCGAATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAAACCTATT
456 TTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATG
*
2341 GGTGCGATCATACCAGCACTAATGCACCCGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
521 GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
2406 C-------G----A-GA---GT--CC-CC-------T--T--T-TT-CA--------T--TTTTT
586 CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
*
2430 TTCCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
651 TTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
2495 CGTCTTAGTATGGCTGCGAATGAA-ACACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAA
716 CGTCTTAGTATGGCTGCGAATGAACA-ACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAA
*
2559 AGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATATTTTTTTCTTCTTCTTTCGAAAA
780 AGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAA
* * *
2624 CTTTTTGGGTAGTCATCGGTTGAAATAAGTATTAAGTCTTAGTACATATGGCGTATACGATCATA
845 TTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATA
2689 TGT
910 TGT
* *
2692 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTCATCATCCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* *
2757 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTACTCAGTTAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
2822 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
2887 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
196 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
2952 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
261 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
3017 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
326 GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
*
3082 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGACGTATACGATCATATG
391 TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
3147 TTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATG
456 TTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATG
*
3212 GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTGAAGCGTGCTTGGG
521 GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
** *
3277 CGAGAGTAGTACTAGGATTCGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCATTTTCATTTTT
586 CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
3342 TTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
651 TTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
* *
3407 CGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGAACATGAACAAGCTGGATCAAA
716 CGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAA
*
3472 GGCCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAA-TTTTTCTTCTTCTTTCGAAAAT
781 GGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
*
3536 TAGTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATA
846 T-TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATA
3601 TGT
910 TGT
3604 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* *
3669 GTGCGATCATACCAGCACTAATGCACCGGATTCCATCAGAACTCCGCAGTTAAACGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
*
3734 GAGAGTAGTACTAGGATGGGTGGCCTCCTGGGAAGTCCTCGTGTTG-----------CA------
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
*
3782 --C----------C--C--CTTTCGGAATTTCTTATTGGAAGCAATCGGTTCATGTAAGCATTAC
196 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
*
3831 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGG-ATCATGAACAAGCTGGATCAAA
261 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCA-CGTGAACAAGCTGGATCAAA
* * *
3895 GGCCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAAATTTTTCTTCTTCTTTCGAAAAC
325 GGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
* *
3960 TTTTTGGGTAGTCATTGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGACGTATACGATCATAT
390 TTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
4025 GTTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAAT
455 GTTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAAT
* * *
4090 GGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGTAGTGACGCGTGCTTGG
520 GGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
** * *
4155 GCGAGAGTAGTACTAGGATTCGTGACCTCCTGGGAAGTCCTCGTGTTGCGCCCCATTTTCA-TTT
585 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTT
4219 TTTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATT
650 TTTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATT
*
4284 ACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGG-ATCATGAACAAGCTGGATCA
715 ACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCA-CGTGAACAAGCTGGATCA
* *
4348 AAGGCCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAAATTTTTCTTCTTCTTTCGAAA
779 AAGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAA
*
4413 ACTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCAT
844 ATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCAT
4478 ATGT
909 ATGT
* * * * *
4482 TCGCAACAATGCACTGGATCAAATGAGATGCGGCTTGTATAGATTTATCATGCAAAGACCAATTG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* *
4547 GTGCGATCATACCAGCAC-AGATGCACCGGATCCCATCAGAACTTCGCAGTTAAGCGTGCTTGGC
66 GTGCGATCATACCAGCACTA-ATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
* **
4611 CAAGAGTAGTACTAGGATGGGTGACCTCCTAAGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
130 CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
* * * *
4676 TTTCTTTTTCACTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATT
195 TTTC-TTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATT
* * * *
4741 ACGTCTTAGTATGGCTGCAAATGAACAACATGTTGGATGAACGGCACGTGAACTAGCTGGATCGA
259 ACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAA
* *
4806 AGGTCGTTTATGTTTGCTCGGTAATG-TTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAA
324 AGGTCGTTTATGTTCGCTCGGTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAA
* *
4870 ATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTTGTACGTATGGCGTATACGATCAT
388 ATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCAT
* *
4935 ATGTTGGCAACAATTCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGAACA
453 ATGTTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCA
* * * * *
5000 ATGGTTGCAATTATACCAGCACTAATGCACCGGATTCCATCAGAACTCCACAGTTAAGCGTGCTT
518 ATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTT
**
5065 GGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATACCTTTTTCATT
583 GGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATT
5130 TTTTTTCTTTT-ATTTTCTTC-ACCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGC
648 TTTTTTCTTTTAATTTTCTTCTA-CTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGC
* * *
5193 ATTGCGTCTTAGTATGGCTGCAAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTAGAT
712 ATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGAT
* *
5258 CGAATGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGA
777 CAAAGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGA
* * *
5323 AAATTTTTTGGGTAGTCATCGGTTGATGTAAGTATTAAGTCTTAGTACGTATAGCGTATAGGATC
842 AAATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATC
5388 ATATGT
907 ATATGT
*
5394 TGGCAACAATGCACCGGATCCAATGAGACGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* * * * * *
5459 GTGTGATCATACCAGCACTAAAGCACCGAATCCCTTTAGAACTCCGCAGTTAAGCCTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
*
5524 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTTGTTGCACCCCTTTTACATT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTC--G--TGTTGCACCCCTTTTTCA-T
*
5589 TTTTTTCTCTTTTAATTTTCTTCTACTTTCGGATTTTCTTATGGGAAGCAATCGGTTCATGTAAG
191 TTTTTT-TCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAG
** *
5654 CATTACGTCTTAGTATTACTGCGAATGAACAACATGTTCGATGAAAGGCACGTGAACAAGCTGGA
255 CATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGA
*
5719 TCAAAGGTTGTTTATGTTCGCTCGGTAAGGTTTCC-----------A---TTTCTTCTTCTTTCG
320 TCAAAGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCG
*
5770 AAAATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGAT
385 AAAATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGAT
*
5835 CATATGTTGGCAACAATTCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGA
450 CATATGTTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGA
* * * *
5900 ACAATGGTTGCGATCATACCAGTACTAATGCACCGGATCCCATCAGAACTCCGCAATTAAGCGTG
515 CCAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTG
*
5965 CTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACACCTTTTTC
580 CTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTC
6030 ATTTTTTTTTTCTTTT-ATTTTCTTC-ACCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATG
645 A--TTTTTTTTCTTTTAATTTTCTTCTA-CTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATG
* *
6093 TAAGCATTGCGTCTTAGTATGGCTGCAAATGAACAACATGTTCGATGAACGGCACGTGAACAAGC
707 TAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGC
* * * *
6158 TAGATCGAATGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAGTTTTTTCTTCTTCT
772 TGGATCAAAGGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCT
* ** *
6223 TTCGAATATTCCTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATA
837 TTCGAAAATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATA
6288 CGATCATATGT
902 CGATCATATGT
*
6299 TGGCAACAATGCACCGGATCCAATAAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* * **
6364 GTGCGATCATACTAGCACTAATGCATCGGATCCCATCAGAACTCTTCAGTTAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
* *
6429 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGTAGTCCTCGTGTTGCACCCTTTTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
* *
6494 TTCTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
196 TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
*
6559 GTCTTAGTATGGCTGCGAATGAATAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
261 GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
*
6624 GTCATTTATGTTCGCTCGGTAAGG-TTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
326 GTCGTTTATGTTCGCTCGGTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
*
6688 TTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
390 TTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
* * * *
6753 GTCGGCAACAATGCACCGGATCCAGTGAGATGTGGCTTGTATAAATTTATCATGCAAAAACCAAT
455 GTTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAAT
* ** * *
6818 GCGTGCG-----ACCAGCACTAATGCTTCGGATCCCGTCAGAACTCCGCAGTCAAGCGTGCTTGG
520 GGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
*
6878 GCGAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTT
585 GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTT
* * *
6943 TTTTCTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAATCGGTTTATGTAAGCATT
650 TTTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATT
*
7008 ACGTCTTAGTATGGCTGCGAATGAACACCATGTTCGATGAACGGCACGTGAACAAGCTGGATCAA
715 ACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAA
* * *
7073 AGGTCGTTTATGTTCACTCTGTAAGG-TTCACAAAGAGAAATAATTTTTTCTTCTCCTTTCGAAA
780 AGGTCGTTTATGTTCGCTCGGTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAA
*
7137 ATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCAT
844 ATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCAT
7202 ATGT
909 ATGT
* * * *
7206 TGGCAACAATGCACCGGATCCAATAAGATGTGGCTTTTACAGATTTATCATGCAAAGACCAGTGG
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* *
7271 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCTCAGTTAAGCGTGCTTGGGC
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
* *
7336 GAGAGTAGTACTAGGATGGCTGACCTCCTGGGAAGTCCTCGTTTTGCACCCCTTTTTCATTTTTT
131 GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
* *
7401 CTTCTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
196 -TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
*
7466 CGTCTTAGTATGGCTGCGAATGAATAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAA
260 CGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAA
* *
7531 GGTCGTTTATGTTCGCTCGGTAAGG-TTCACTAAGTGAAATAATTTTTTCTTCTTCTTTCGAAAA
325 GGTCGTTTATGTTCGCTCGGTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAA
* * *
7595 TTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTTTTATTACGGT-TGGCGTATACGATCAT
389 TTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTAC-GTATGGCGTATACGATCAT
* * *
7659 ATGTCGGCAACAATGCACCGGATCCAATGAGATGTGGCTTTTATAGATTTA-CAATGCACAGACC
453 ATGTTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATC-ATGCAAAGACC
* * * *
7723 AATGGGTGCGATCATACC-GGA-TAAAATGCATCGGATCCCGTCAGATA-TCCGCAGTCAAGCGT
517 AATGGGTGCGATCATACCAGCACT--AATGCACCGGATCCCATCAGA-ACTCCGCAGTTAAGCGT
* * * * * *
7785 GCTTGGACGAGAGTAGAACTAGGATGGGTGATCTTCTTGGAAGTCCTCATGTTGCACCCCTTTTT
579 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTT
* * *
7850 CATTTTTTTTCTTTTTATTTTCTTCTCCGTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTA
644 CATTTTTTTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTA
7915 AGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTG
709 AGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTG
7980 GATCAAAGGTCGTTTATGTTCGCTCGGTAAGG-TTCACAAAGAGAAATAATTTTTTCTTCTTCTT
774 GATCAAAGGTCGTTTATGTTCGCTCGGTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTT
*
8044 TCGAAAATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATAC
838 TCGAAAATTTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATAC
8109 GATCATATGT
903 GATCATATGT
* * * *
8119 CGGCAACAATGCACCGGATCC-ATTAGACGTGGCTTGTATAGATTTATCATGCAAAGACCAATGA
1 TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
* * * *
8183 ATGCGATCATAGCAGCACTAATCCACCGGATCCTATCAGAACTCCGCAGTT-AGCCGTGCTTGGG
66 GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG-CGTGCTTGGG
* **
8247 CGAGAGTAGTACTAGGATGGGTGACTTCCTCTGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
130 CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
* *
8312 TTTCTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
195 TTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
* * * *
8377 CGTCTTAGTATGGCTGCGAATGAATAACATGATCGATGAACGGCTCGTGAACAAACTGGATCAAA
260 CGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAA
* * *
8442 GCTCGTTTATTTTTGCTCGGTA
325 GGTCGTTTATGTTCGCTCGGTA
8464 CTAATGTTGC
Statistics
Matches: 7052, Mismatches: 369, Indels: 264
0.92 0.05 0.03
Matches are distributed among these distances:
870 1 0.00
871 822 0.12
873 1 0.00
877 2 0.00
878 402 0.06
879 442 0.06
881 3 0.00
882 3 0.00
883 4 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 4 0.00
893 1 0.00
894 2 0.00
895 2 0.00
896 1 0.00
897 3 0.00
898 4 0.00
899 145 0.02
900 10 0.00
901 21 0.00
902 2 0.00
903 269 0.04
905 416 0.06
906 17 0.00
907 418 0.06
908 422 0.06
909 181 0.03
910 409 0.06
911 459 0.07
912 1738 0.25
913 674 0.10
914 2 0.00
916 17 0.00
917 144 0.02
918 5 0.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (912 bp):
TGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGG
GTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGC
GAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT
TTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTAC
GTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAG
GTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATT
TTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATG
TTGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATG
GGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
CGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTT
TTTCTTTTAATTTTCTTCTACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTA
CGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAA
GGTCGTTTATGTTCGCTCGGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAAT
TTTTTGGGTAGTCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATAT
GT
Found at i:4918 original size:457 final size:456
Alignment explanation
Indices: 3784--8463 Score: 7461
Period size: 457 Copynumber: 10.3 Consensus size: 456
3774 GTGTTGCACC
*
3784 CCTTTCGGAATTTCTTATTGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* *
3849 ATGAACAACATGTTCGATGAACGG-ATCATGAACAAGCTGGATCAAAGGCCGTTTATGTTCGCTC
66 ATGAACAACATGTTCGATGAACGGCA-CGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTC
* * * *
3913 GGTAAGGTTTCCAAAGAGAAATAAATTTTTCTTCTTCTTTCGAAAACTTTTTGGGTAGTCATTGG
130 GGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
*
3978 TTGAAGTAAGTATTAAGTCTTAGTACGTATGACGTATACGATCATATGTTGGCAACAATGCACCG
195 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCG
4043 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGC
260 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGC
* * *
4108 ACTAATGCACCGGATCCCATCAGAACTCCGTAGTGACGCGTGCTTGGGCGAGAGTAGTACTAGGA
325 ACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
** * * *
4173 TTCGTGACCTCCTGGGAAGTCCTCGTGTTGCGCCCCATTTTCA-TTTTTTTCTTTTAATTTTCTT
390 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCTT
4237 CT
455 CT
*
4239 ACTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* *
4304 ATGAACAACATGTTCGATGAACGG-ATCATGAACAAGCTGGATCAAAGGCCGTTTATGTTCGCTC
66 ATGAACAACATGTTCGATGAACGGCA-CGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTC
* * *
4368 GGTAAGGTTTCCAAAGAGAAATAAATTTTTCTTCTTCTTTCGAAAACTTTTTGGGTAGTCATCGG
130 GGTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
* *
4433 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTCGCAACAATGCACTG
195 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCG
* * *
4498 GATCAAATGAGATGCGGCTTGTATAGATTTATCATGCAAAGACCAATTGGTGCGATCATACCAGC
260 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGC
* * *
4563 AC-AGATGCACCGGATCCCATCAGAACTTCGCAGTTAAGCGTGCTTGGCCAAGAGTAGTACTAGG
325 ACTA-ATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGG
** *
4627 ATGGGTGACCTCCTAAGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTCACTTTC
389 ATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTT-ATTTTC
4692 TTCT
453 TTCT
* *
4696 CCTTTCAGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCAA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* * * *
4761 ATGAACAACATGTTGGATGAACGGCACGTGAACTAGCTGGATCGAAGGTCGTTTATGTTTGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
*
4826 GTAATG-TTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
131 GTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
* *
4890 TTGAAGTAAGTATTAAGTCTTTGTACGTATGGCGTATACGATCATATGTTGGCAACAATTCACCG
195 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCG
* * * *
4955 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGAACAATGGTTGCAATTATACCAGC
260 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGC
* *
5020 ACTAATGCACCGGATTCCATCAGAACTCCACAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
325 ACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
**
5085 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATACCTTTTTCATTTTTTTTC-TTTTATTTTCTT
390 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCTT
*
5149 CA
455 CT
* *
5151 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTGCGTCTTAGTATGGCTGCAA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* * *
5216 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTAGATCGAATGTCGTTTATGTTCGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
*
5281 GTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGTCATCGGT
131 GTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGT
* * *
5346 TGATGTAAGTATTAAGTCTTAGTACGTATAGCGTATAGGATCATATGTTGGCAACAATGCACCGG
196 TGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCGG
* *
5411 ATCCAATGAGACGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGTGATCATACCAGCA
261 ATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGCA
* * * * *
5476 CTAAAGCACCGAATCCCTTTAGAACTCCGCAGTTAAGCCTGCTTGGGCGAGAGTAGTACTAGGAT
326 CTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
*
5541 GGGTGACCTCCTGGGAAGTCCTCGTGTTTGTTGCACCCCTTTTACATTTTTTTTCTCTTTTAATT
391 GGGTGACCTCCTGGGAAGTCCTC--G--TGTTGCACCCCTTTTTCATTTTTTTTCT-TTTT-ATT
5606 TTCTTCT
450 TTCTTCT
* * **
5613 ACTTTCGGATTTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATTACTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* *
5678 ATGAACAACATGTTCGATGAAAGGCACGTGAACAAGCTGGATCAAAGGTTGTTTATGTTCGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
5743 GTAAGGTTTCC-----------A---TTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGT
131 GTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGT
*
5794 TGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATTCACCGG
196 TGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCGG
* * *
5859 ATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGAACAATGGTTGCGATCATACCAGTA
261 ATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGCA
*
5924 CTAATGCACCGGATCCCATCAGAACTCCGCAATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
326 CTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
* *
5989 GGGTGACCTCCTGGGAAGTCCTCGTGTTGCACACCTTTTTCATTTTTTTTTTCTTTTATTTTCTT
391 GGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCT-TTTTATTTTCTT
*
6054 CA
455 CT
* *
6056 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTGCGTCTTAGTATGGCTGCAA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* * *
6121 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTAGATCGAATGTCGTTTATGTTCGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
* * **
6186 GTAAGGTTTCCAAAGAGAAATAGTTTTTTCTTCTTCTTTCGAATATTCCTTGGGTAGGCATCGGT
131 GTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGT
6251 TGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCGG
196 TGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCGG
* *
6316 ATCCAATAAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACTAGCA
261 ATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGCA
* **
6381 CTAATGCATCGGATCCCATCAGAACTCTTCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
326 CTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
* *
6446 GGGTGACCTCCTGGGTAGTCCTCGTGTTGCACCCTTTTTTCATTTTTTTTCTTTTTATTTTCTTC
391 GGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCTTC
6511 T
456 T
6512 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* *
6577 ATGAATAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCATTTATGTTCGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
6642 GTAAGG-TTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
131 GTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
*
6706 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTCGGCAACAATGCACCG
195 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCG
* * * *
6771 GATCCAGTGAGATGTGGCTTGTATAAATTTATCATGCAAAAACCAATGCGTGCG-----ACCAGC
260 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGC
** * *
6831 ACTAATGCTTCGGATCCCGTCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
325 ACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
*
6896 TGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCTT
390 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCTT
6961 CT
455 CT
*
6963 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTTATGTAAGCATTACGTCTTAGTATGGCTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* * *
7028 ATGAACACCATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCACTCT
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
*
7093 GTAAGG-TTCACAAAGAGAAATAATTTTTTCTTCTCCTTTCGAAAATTTTTTGGGTAGGCATCGG
131 GTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
7157 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCG
195 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCG
* * * *
7222 GATCCAATAAGATGTGGCTTTTACAGATTTATCATGCAAAGACCAGTGGGTGCGATCATACCAGC
260 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGC
* *
7287 ACTAATGCACCGGATCCCATCAGAATTCCTCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
325 ACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGA
* *
7352 TGGCTGACCTCCTGGGAAGTCCTCGTTTTGCACCCCTTTTTCATTTTTTCTTCTTTTTATTTTCT
390 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTT-TTCTTTTTATTTTCT
7417 TCT
454 TCT
7420 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
*
7485 ATGAATAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
* *
7550 GTAAGG-TTCACTAAGTGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
131 GTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
* * *
7614 TTGAAGTAAGTATTAAGTTTTATTACGGT-TGGCGTATACGATCATATGTCGGCAACAATGCACC
195 TTGAAGTAAGTATTAAGTCTTAGTAC-GTATGGCGTATACGATCATATGTTGGCAACAATGCACC
* *
7678 GGATCCAATGAGATGTGGCTTTTATAGATTTA-CAATGCACAGACCAATGGGTGCGATCATACC-
259 GGATCCAATGAGATGTGGCTTGTATAGATTTATC-ATGCAAAGACCAATGGGTGCGATCATACCA
* * * * * *
7741 GGA-TAAAATGCATCGGATCCCGTCAGATA-TCCGCAGTCAAGCGTGCTTGGACGAGAGTAGAAC
323 GCACT--AATGCACCGGATCCCATCAGA-ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTAC
* * * *
7804 TAGGATGGGTGATCTTCTTGGAAGTCCTCATGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATT
385 TAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATT
7869 TTCTTCT
450 TTCTTCT
*
7876 CCGTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
7941 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
8006 GTAAGG-TTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
131 GTAAGGTTTC-CAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGG
*
8070 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTCGGCAACAATGCACCG
195 TTGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCG
* * ** *
8135 GATCC-ATTAGACGTGGCTTGTATAGATTTATCATGCAAAGACCAATGAATGCGATCATAGCAGC
260 GATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGC
* *
8199 ACTAATCCACCGGATCCTATCAGAACTCCGCAGTT-AGCCGTGCTTGGGCGAGAGTAGTACTAGG
325 ACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG-CGTGCTTGGGCGAGAGTAGTACTAGG
* **
8263 ATGGGTGACTTCCTCTGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCT
389 ATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCT
8328 TCT
454 TCT
8331 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
1 CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
* * * * * * *
8396 ATGAATAACATGATCGATGAACGGCTCGTGAACAAACTGGATCAAAGCTCGTTTATTTTTGCTCG
66 ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
8461 GTA
131 GTA
8464 CTAATGTTGC
Statistics
Matches: 3915, Mismatches: 264, Indels: 92
0.92 0.06 0.02
Matches are distributed among these distances:
443 139 0.04
444 30 0.01
446 1 0.00
448 241 0.06
451 427 0.11
454 4 0.00
455 1088 0.28
456 717 0.18
457 1096 0.28
458 5 0.00
459 24 0.01
461 4 0.00
462 139 0.04
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (456 bp):
CCTTTCGGAATTTCTTATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGA
ATGAACAACATGTTCGATGAACGGCACGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCG
GTAAGGTTTCCAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGT
TGAAGTAAGTATTAAGTCTTAGTACGTATGGCGTATACGATCATATGTTGGCAACAATGCACCGG
ATCCAATGAGATGTGGCTTGTATAGATTTATCATGCAAAGACCAATGGGTGCGATCATACCAGCA
CTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
GGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCTTC
T
Found at i:7409 original size:17 final size:17
Alignment explanation
Indices: 7386--7424 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7376 GTTTTGCACC
7386 CCTTTTTCATTTT-TTCT
1 CCTTTTT-ATTTTCTTCT
*
7403 TCTTTTTATTTTCTTCT
1 CCTTTTTATTTTCTTCT
7420 CCTTT
1 CCTTT
7425 CGGAATTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (17 bp):
CCTTTTTATTTTCTTCT
Found at i:8806 original size:389 final size:389
Alignment explanation
Indices: 8089--8852 Score: 1136
Period size: 389 Copynumber: 2.0 Consensus size: 389
8079 GTATTAAGTC
* * *
8089 TTAGTACGTATGGCGTATACGATCATATGTCGGCAACAATGCACCGGATCCATTAGACGTGGCTT
1 TTAGTACGTAGGGCGTATACGATAATATGTCGGCAACAATGCACCGGATCCATGAGACGTGGCTT
* * * *
8154 GTATAGATTTATCATGCAAAGACCAATGAATGCGATCATAGCAGCACTAATCCACCGGATCCTAT
66 GTATAGATTTATCATGCAAAGACCAATGAATGCGACCATACCAGCACTAATCCACCGAATCCCAT
* * ** * *
8219 CAGAACTCCGCAGTTAGCCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACTTCCTCTGAAGT
131 CAGAACTCCGCAGTAAGCCGTGCCTAAGCGAGAGTAGTACTAGGATGGGTGACCTCCTCGGAAGT
* * * *
8284 CCTCGTGTTGCACCCCTTTTTCATTTTTTTTCTTTTTATTTTCTTCTCCTTTCGGAATTTCTTAT
196 CCTCATGTTGAACCCCTTTTTCATTTTTTCTCTTTTTATTTGCTTCTCCTTTCGGAATTTCTTAT
* *
8349 GGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAATAACATGATCGAT
261 GGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACAGGATCGAT
* * * *
8414 GAACGGCTCGTGAACAAACTGGATCAAAGCTCGTTTATTTTTGCTCGGTACTAATGTTGCACCA
326 GAACGGCTCGTGAACAAACTGGATCAAAACTCATTTATCTTCGCTCGGTACTAATGTTGCACCA
* *
8478 TTAGTACGTAGGGCGTATACGATAATATGTCGGCAACAATGCACCGTATCCAATGAGATGTGGCT
1 TTAGTACGTAGGGCGTATACGATAATATGTCGGCAACAATGCACCGGATCC-ATGAGACGTGGCT
* ** *
8543 TGTATAGATTTATCATGCAAAGACTAATGGGTGCGACCATACCAGCACTAATGCACCGAATCCCA
65 TGTATAGATTTATCATGCAAAGACCAATGAATGCGACCATACCAGCACTAATCCACCGAATCCCA
* * * * *
8608 TCAGAAGTCTGCAGTGAAG-CGTGCCTAAGCGAGAGTAGTACTAGGATTGGTGACCTCTTGGGAA
130 TCAGAACTCCGCAGT-AAGCCGTGCCTAAGCGAGAGTAGTACTAGGATGGGTGACCTCCTCGGAA
8672 GTCCTCATGTTGAACCCCTTTTTCATTTTTTCT-TTTTTATTTGCTTCTCCTTTCGGAATTTCTT
194 GTCCTCATGTTGAACCCCTTTTTCATTTTTTCTCTTTTTATTTGCTTCTCCTTTCGGAATTTCTT
* * * *
8736 ATGGGAAGCAATCGGTTCATTTGAGCATTACGTCTTAGTATGGCTGCGAATGAACAGCAGGTTCG
259 ATGGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACAGGATCG
**
8801 ATGAACGGCTCGTGAACAAGGTGGATCAAAACTCATTTATCTTCGCTCGGTA
324 ATGAACGGCTCGTGAACAAACTGGATCAAAACTCATTTATCTTCGCTCGGTA
8853 AGGTTCTTAA
Statistics
Matches: 333, Mismatches: 40, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
389 183 0.55
390 148 0.44
391 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.31
Consensus pattern (389 bp):
TTAGTACGTAGGGCGTATACGATAATATGTCGGCAACAATGCACCGGATCCATGAGACGTGGCTT
GTATAGATTTATCATGCAAAGACCAATGAATGCGACCATACCAGCACTAATCCACCGAATCCCAT
CAGAACTCCGCAGTAAGCCGTGCCTAAGCGAGAGTAGTACTAGGATGGGTGACCTCCTCGGAAGT
CCTCATGTTGAACCCCTTTTTCATTTTTTCTCTTTTTATTTGCTTCTCCTTTCGGAATTTCTTAT
GGGAAGCAATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACAGGATCGAT
GAACGGCTCGTGAACAAACTGGATCAAAACTCATTTATCTTCGCTCGGTACTAATGTTGCACCA
Found at i:10122 original size:455 final size:454
Alignment explanation
Indices: 9259--11784 Score: 3624
Period size: 455 Copynumber: 5.6 Consensus size: 454
9249 CATGATCGAG
*
9259 TGGCGCATACGATAATATGTCTACAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
** * *
9324 TATCATGGGAAGACCAAA-GGGTGGGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTC
66 TATCATGCAAAGA-CAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTC
* * * * * *
9388 CGCAGTTAAGCGTGCTCCAGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGT-ACTCATG
130 CGCAGTTAAGCGTGCTTCGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA-TCCCTCGTG
* **
9452 TTGAACCCCTTTTTCATTTTT-TCTTTTTATTTTC-TCTCCTTTCGGAATTTCTTATGGGAAGCA
194 TTGCACCATTTTTTCATTTTTCT-TTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCA
* * * * **
9515 ATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAATAGCT
258 ATCGGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
* * * * * * *
9580 CGTGAACAACCTAGATCAAAGGTCGTTTATGTTTGCTCGGTAAGGTTCATAAAAAGAAATAACTT
323 CGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTT
*
9645 TTTCTTCTTCTTTCGAAATTTTTTTGTGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACG
388 TTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACG
9710 TA
453 TA
* ** * * *
9712 TGGCGTATACGAGCATATGTCGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATTGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
9777 TATCATGCAAAGGA-AAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTC
66 TATCATGCAAA-GACAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTC
*
9841 CGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTA-GAGTGGGTGACCTCCTGGGAATCCCTCGTG
130 CGCAGTTAAGCGTGCTTCGGCGAGAGTAGTACTAGGA-TGGGTGACCTCCTGGGAATCCCTCGTG
9905 TTGCACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCA
194 TTGCACCATTTTTTCATTTTT-CTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCA
* * *
9970 ATCGGTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGCTCGATGAACGACT
258 ATCGGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
*
10035 CGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAAGAATTT
323 CGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTT
*
10100 TTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTACTACG
388 TTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACG
10165 TA
453 TA
* * * * *
10167 GGGCGTATAGGATAATATGTCTGCAATAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* * * * * * *
10232 TATCAGGCAAAGACTAATGGGTGCGACCCTACCAGCACTGATGCACCGGATCCCATCAGAACTCT
66 TATCATGCAAAGACAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCC
* * * * *
10297 GCAGTGAAGCGTGGC-TGGGCGAGAGTTGTACTAGGATGGGTGACCTCTTGGGAAGT-CCTCATG
131 GCAGTTAAGCGT-GCTTCGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA-TCCCTCGTG
* * *
10360 TTGAACCACTTTTTCATTTTTTCTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCA
194 TTGCACCATTTTTTCA-TTTTTCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCA
* * * * * * *
10425 ATCGGTTCATGTAAGCATTACGTCTTATTATGGCTGCGAATAAACAGCAGGTTCAATGAACGGCT
258 ATCGGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
* * * *
10490 CGTGAACAAGCTGGATCAAAACTCGTTTATCTTCGTTCGGTAAGGTTCACAAAGAGAAATAATTC
323 CGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTT
* * *
10555 TTTCTTCTTCTTTCGAAAATTTTTTAGGTAGGCATCGATTGAAGTAAGTATTAAGTCTTAGTACG
388 TTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACG
10620 TA
453 TA
** * * * * * *
10622 TGGCTTATACGATCATATGTCGGGAACAATGCACCGGATCCAATGAGATGTGGCTCGTATTGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* * * *
10687 TATCATGCAAAGACCAATGGGTGCGATCATA-TCAGCACTAATGCACCAGATCCCAACAAAACTC
66 TATCATGCAAAGACAAATGGGTGCGATCATACT-AGCACTAATGCACCGGATCCCATCAGAACTC
*
10751 CGCAGTTAAGCGTGCTT-GGACGAGAGTAGTACTA-GAGTGGGTGACCTCCTGGGAATCCCTTGT
130 CGCAGTTAAGCGTGCTTCGG-CGAGAGTAGTACTAGGA-TGGGTGACCTCCTGGGAATCCCTCGT
10814 GTTGCACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGC
193 GTTGCACCATTTTTTCATTTTT-CTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGC
* * *
10879 AATCGGTTCATTTAAGCATTAAATCTTAATATGGTTGCGAATGAACAGCATGATCGATGAACGGC
257 AATCGGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGC
* * * *
10944 TCATGAATAAGCTAGATTAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
322 TCGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
11009 TTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTAC
387 TTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTAC
11074 GTA
452 GTA
*
11077 TGGCGCATACGATAATATGTCTGGAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* ** * * * *
11142 TATGATGGGAAGACCAA-GGGTGCGATCAAACTCGCACTAATGCACCTGATCCCATCAGAACTCC
66 TATCATGCAAAGACAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCC
* * * *
11206 GCAGTTAAGCGTGCCTCGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGCCCTCGTGTT
131 GCAGTTAAGCGTGCTTCGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATCCCTCGTGTT
* *
11271 GCACCCTTTTTTCATAATTTCTTTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCA
196 GCACCATTTTTTCAT--TTT-TCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCA
* * *
11336 ATCGGTTCATTTAAGCATTACATCATAGTATGGCTGTGAATGAACAGCATGATCGATGAATGGCT
258 ATCGGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
11401 CGTGAACAAGCTGGATCAAAG-TGCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
323 CGTGAACAAGCTGGATCAAAGCT-CGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
* *
11465 ATTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAGTCTTAGTAC
387 TTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTAC
*
11530 ATA
452 GTA
* * * * *
11533 TGGCGCATACGATAATATGTCTGCAACTATGCTCCGGGTCCATTGAAATGTGGATTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* * *
11598 TATGATGCAAAGGA-AAATGGGTGCGATCATACCAGCACTAACGCACCGGATCCCATCAGAACTC
66 TATCATGCAAA-GACAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTC
* *
11662 CGCAGTTAAGCGTGCTTGGGCGATAGTAGTACTA-GAGTGGGTGACCTCCTGGGAATCCCTCGTG
130 CGCAGTTAAGCGTGCTTCGGCGAGAGTAGTACTAGGA-TGGGTGACCTCCTGGGAATCCCTCGTG
* * *
11726 TTGCTCCATTTTTCCATTTTTGCTTTTTTATTTTCTTCTCCTTCCGGAATTTCTTATGG
194 TTGCACCATTTTTTCATTTTT-CTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGG
11785 TTGCAAATGA
Statistics
Matches: 1859, Mismatches: 185, Indels: 56
0.89 0.09 0.03
Matches are distributed among these distances:
452 6 0.00
453 181 0.10
454 136 0.07
455 1114 0.60
456 309 0.17
457 113 0.06
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (454 bp):
TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
TATCATGCAAAGACAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCC
GCAGTTAAGCGTGCTTCGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAATCCCTCGTGTT
GCACCATTTTTTCATTTTTCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAATC
GGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCTCGT
GAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTTTTT
CTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTA
Found at i:11026 original size:910 final size:908
Alignment explanation
Indices: 9259--12845 Score: 5223
Period size: 910 Copynumber: 4.0 Consensus size: 908
9249 CATGATCGAG
*
9259 TGGCGCATACGATAATATGTCTACAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* *
9324 TATCATGGGAAGACCAAAGGGTGGGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCC
66 TATCATGGGAAGACCAAAGGGTGCGATCAAACCAGCACTAATGCACCGGATCCCATCAGAACTCC
* *
9389 GCAGTTAAGCGTGCTCCAGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTACTCATGTT
131 GCAGTTAAGCGTGCT-CGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGTT
* *
9454 GAACCCCTTTTTCATTTTTTC-TTTTTATTTTC-TCTCCTTTCGGAATTTCTTATGGGAAGCAAT
195 GAACCCTTTTTTCATTTTTTCTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCAAT
* * * **
9517 CGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAATAGCTCG
260 CGGTTCATGTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCTCG
* * ** * * * *
9582 TGAACAACCTAGATCAAAGGTCGTTTATGTTTGCTCGGTAAGGTTCATAAAAAGAAATAACTTTT
325 TGAACAAGCTGGATCAAAACTCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAA-TTTT
* *
9647 TCTTCTTCTTTCGAAATTTTTTTGTGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTA
389 TCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTA
* ** * * *
9712 TGGCGTATACGAGCATATGTCGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTATTGATT
454 TGGCGCATACGATAATATGTCGGCAACAATGCACCGGATCCAATGAAATGTGGATTGTATAGATT
*
9777 TATCATGCAAAGGAAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCC
519 TATCATGCAAAGGAAAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCC
9842 GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTCGTGTT
584 GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTCGTGTT
9907 GCACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAAT
649 GCACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAAT
* *
9972 CGGTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGCTCGATGAACGACTCG
714 CGGTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCTCG
*
10037 TGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAAGAATTTTT
779 TGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTTTT
*
10102 TCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTACTACGTA
844 TCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTA
* * * * *
10167 GGGCGTATAGGATAATATGTCTGCAATAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* * * * ** *
10232 TATCA-GGCAAAGACTAATGGGTGCGACCCTACCAGCACTGATGCACCGGATCCCATCAGAACTC
66 TATCATGG-GAAGACCAAAGGGTGCGATCAAACCAGCACTAATGCACCGGATCCCATCAGAACTC
* * * * *
10296 TGCAGTGAAGCGTGGCTGGGCGAGAGTTGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGT
130 CGCAGTTAAGCGT-GCTCGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGT
10361 TGAACCAC-TTTTTCATTTTTTCTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCA
194 TGAACC-CTTTTTTCATTTTTTCTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCA
* * * * * *
10425 ATCGGTTCATGTAAGCATTACGTCTTATTATGGCTGCGAATAAACAGCAGGTTCAATGAACGGCT
258 ATCGGTTCATGTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
*
10490 CGTGAACAAGCTGGATCAAAACTCGTTTATCTTCGTTCGGTAAGGTTCACAAAGAGAAATAATTC
323 CGTGAACAAGCTGGATCAAAACTCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT-
* *
10555 TTTCTTCTTCTTTCGAAAATTTTTTAGGTAGGCATCGATTGAAGTAAGTATTAAGTCTTAGTACG
387 TTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACG
** * * * * * *
10620 TATGGCTTATACGATCATATGTCGGGAACAATGCACCGGATCCAATGAGATGTGGCTCGTATTGA
452 TATGGCGCATACGATAATATGTCGGCAACAATGCACCGGATCCAATGAAATGTGGATTGTATAGA
* * * * *
10685 TTTATCATGCAAA-GACCAATGGGTGCGATCATATCAGCACTAATGCACCAGATCCCAACAAAAC
517 TTTATCATGCAAAGGA-AAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC
* *
10749 TCCGCAGTTAAGCGTGCTTGGACGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTTGT
581 TCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTCGT
10814 GTTGCACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGC
646 GTTGCACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGC
* *
10879 AATCGGTTCATTTAAGCATTAAATCTTAATATGGTTGCGAATGAACAGCATGATCGATGAACGGC
711 AATCGGTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGC
* * * *
10944 TCATGAATAAGCTAGATTAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
776 TCGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
11009 TTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTAC
841 TTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTAC
11074 GTA
906 GTA
*
11077 TGGCGCATACGATAATATGTCTGGAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* *
11142 TATGATGGGAAGACC-AAGGGTGCGATCAAACTC-GCACTAATGCACCTGATCCCATCAGAACTC
66 TATCATGGGAAGACCAAAGGGTGCGATCAAAC-CAGCACTAATGCACCGGATCCCATCAGAACTC
* *
11205 CGCAGTTAAGCGTGCCTCGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGCCCTCGTGT
130 CGCAGTTAAGCGTG-CTCGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGT
* *
11270 TGCACCCTTTTTTCATAATTTCTT-TTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAG
194 TGAACCCTTTTTTCAT--TTT-TTCTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAG
* * * *
11334 CAATCGGTTCATTTAAGCATTACATCATAGTATGGCTGTGAATGAACAGCATGATCGATGAATGG
256 CAATCGGTTCATGTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGG
* *
11399 CTCGTGAACAAGCTGGATC-AAAGTGCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAA
321 CTCGTGAACAAGCTGGATCAAAACT-CGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAA
* *
11463 TTATTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAGTCTTAGT
385 TT-TTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGT
* * * * * *
11528 ACATATGGCGCATACGATAATATGTCTGCAACTATGCTCCGGGTCCATTGAAATGTGGATTGTAT
449 ACGTATGGCGCATACGATAATATGTCGGCAACAATGCACCGGATCCAATGAAATGTGGATTGTAT
* *
11593 AGATTTATGATGCAAAGGAAAATGGGTGCGATCATACCAGCACTAACGCACCGGATCCCATCAGA
514 AGATTTATCATGCAAAGGAAAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
*
11658 ACTCCGCAGTTAAGCGTGCTTGGGCGATAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTC
579 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTC
* * *
11723 GTGTTGCTCCATTTTTCCATTTTTGCTTTTTTATTTTCTTCTCCTTCCGGAATTTC-T-T-----
644 GTGTTGCACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAA
11781 ---AT-GG-----TT--G--------C-----A--------AATGAACAGCATGATCGATGAACG
709 GCAATCGGTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACG
* ** *
11814 GCTCGTGAACAAGCTGGATTAAAGCTCGTTTATGTTCGCAAGGTAAGCTTCACAAAGAGAAATAA
774 GCTCGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAA
11879 TTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGT
839 TTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGT
11944 ACGTA
904 ACGTA
* * *
11949 TGGCGCATACTATAATACGTCTGCAACAATGCTCCGGATCTAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
*
12014 TATCATGGGAAGACCAAAGGGTGCGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCC
66 TATCATGGGAAGACCAAAGGGTGCGATCAAACCAGCACTAATGCACCGGATCCCATCAGAACTCC
* *
12079 GCAGTTAAGCGTGCTTCGGTGAGAGTAGTACTAGGATGGGTAACCTCTTGGGAAG-CCTTCGTGT
131 GCAGTTAAGCGTGC-TCGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCC-TCATGT
* *
12143 TGCACCCTTTTTTCATATTTTCTTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCA
194 TGAACCCTTTTTTCATTTTTTC-TTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCA
*
12208 ATCGGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
258 ATCGGTTCATGTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
*
12273 CGTGAACAAGCTGGATCAAAGCTCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTT
323 CGTGAACAAGCTGGATCAAAACTCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAA-TT
* *
12338 TTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAATCTTAGTACG
387 TTTCTTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACG
* * * * *
12403 TATGGCGCATACGATAATATGTCTGCAATAATGCTCCGGGTCCATTGAAATGTGGATTGTATAGA
452 TATGGCGCATACGATAATATGTCGGCAACAATGCACCGGATCCAATGAAATGTGGATTGTATAGA
* * *
12468 TTTATCATGCAAA-GACCAATGGGTGCAATCATACCA-CAACTAATGCACCGAATCCCATCAGAA
517 TTTATCATGCAAAGGA-AAATGGGTGCGATCATACCAGC-ACTAATGCACCGGATCCCATCAGAA
* ** * * *
12531 CACCGCAGTTAAGCGTGCTTCCGCGAGAGTAGTACTTG-GATGGGTGACCACCTGGTAAGT-CCT
580 CTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGAG-TGGGTGACCTCCTGGGAA-TCCCT
* *
12594 CGTGTTGCAACCA-TTTTTCATTTTT-TTCTTTTTATTTTCTTCTCCTTTCGGTATTTCTTATGG
643 CGTGTTGC-ACCATTTTTTCATTTTTGCT-TTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGG
* ** * * * *
12657 GAAGCAATCGGTTCATATAAGCATTATGTCTTAGTAAGGCAGCGAATGGACAGCATGTTCGATGA
706 GAAGCAATCGGTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGA
* ** *
12722 ACGGCTCGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTTAGTAAGGTTCACAAAGTGAAA
771 ACGGCTCGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAA
12787 TAATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTA
836 TAATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTA
12846 TTTTTTTGGG
Statistics
Matches: 2422, Mismatches: 188, Indels: 135
0.88 0.07 0.05
Matches are distributed among these distances:
870 2 0.00
871 7 0.00
872 665 0.27
873 130 0.05
874 1 0.00
880 1 0.00
882 2 0.00
883 2 0.00
885 1 0.00
888 1 0.00
890 1 0.00
893 1 0.00
895 2 0.00
898 1 0.00
900 2 0.00
901 2 0.00
903 1 0.00
907 2 0.00
908 187 0.08
909 129 0.05
910 706 0.29
911 572 0.24
912 4 0.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (908 bp):
TGGCGCATACGATAATATGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
TATCATGGGAAGACCAAAGGGTGCGATCAAACCAGCACTAATGCACCGGATCCCATCAGAACTCC
GCAGTTAAGCGTGCTCGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGTTG
AACCCTTTTTTCATTTTTTCTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCAATC
GGTTCATGTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCTCGT
GAACAAGCTGGATCAAAACTCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTTTTC
TTCTTCTTTCGAAAATTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTATG
GCGCATACGATAATATGTCGGCAACAATGCACCGGATCCAATGAAATGTGGATTGTATAGATTTA
TCATGCAAAGGAAAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGC
AGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTCGTGTTGC
ACCATTTTTTCATTTTTGCTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAATCG
GTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCTCGTG
AACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTTTTTC
TTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGTACGTA
Found at i:12597 original size:872 final size:872
Alignment explanation
Indices: 9259--12656 Score: 4181
Period size: 872 Copynumber: 3.8 Consensus size: 872
9249 CATGATCGAG
* *
9259 TGGCGCATACGATAATATGTCTACAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATACGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
*
9324 TATCATGGGAAGACCAAAGGGTGGGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCC
66 TATCATGGGAAGACC-AAGGGTGCGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCC
* * ** *
9389 GCAGTTAAGCGTG-CTCCAGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTACTCATGT
130 GCAGTTAAGCGTGCCT-CGGTGAGAGTAGTACTAGGATGGGTAACCTCTTGGGAAGCCCTCGTGT
* * * *
9453 TGAACCCCTTTTTCAT--TTT-TTCTTTTTATTTTC-TCTCCTTTCGGAATTTCTTATGGGAAGC
194 TGCACCCTTTTTTCATAATTTCTTTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGC
* * * * * **
9514 AATCGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAACATGTTCGATGAATAGC
259 AATCGGTTCATTTAAGCATTACATCATAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGC
* * * * * *
9579 TCGTGAACAACCTAGATCAAAG-GTCGTTTATGTTTGCTCGGTAAGGTTCATAAAAAGAAATAAC
324 TCGTGAACAAGCTGGATCAAAGTG-CGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAA-
* * *
9643 TT-TTTCTTCTTCTTTCGAAATTTTTTTGTGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTAGT
387 TTATTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAATCTTAGT
* * ** * * * * * * *
9707 ACGTATGGCGTATACGAGCATATGTCGGCAACAATGCACCGGATCCAATGAGATGTGGCTTGTAT
452 ACATATGGCGCATACGATAATATGTCTGCAACTATGCTCCGGGTCCATTGAAATGTGGATTGTAT
* * * * *
9772 TGATTTATCATGCAAAGGAAAATGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGA
517 AGATTTATCATGCAAAGGAAAATGGGTGCAATCATACCAGCACTAACGCACCGAATCCCATCAGA
* ** *
9837 ACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTC
582 ACACCGCAGTTAAGCGTGCTTCCGCGAGAGTAGTACTAGAGTGGGTGACCACCTGGGAATCCCTC
*
9902 GTGTTGC-ACCATTTTTTCATTTTTGCT-TTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGG
647 GTGTTGCAACCA-TTTTTCATTTTT-CTCTTTTTATTTTCTTCTCCTTCCGGAATTTC-T-T---
*
9965 AAGCAATCGGTTCATTTAAGCATTAAATCTTAGTATGGCTGCGAATGAACAGCATGCTCGATGAA
705 -----AT-GG-----TT--G--------C-----A--------AATGAACAGCATGATCGATGAA
* * * * ** * *
10030 CGACTCGTGAACAAGCTGGATCAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAAG
736 CGGCTCATGAACAAGCTAGATTAAAGCTCGTTTATGTTCGCAAGGTAAGCTTCACAAAGAGAAAT
10095 AATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTA
801 AATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGTCTTA
*
10160 CTACGTA
866 GTACGTA
* * * * * *
10167 GGGCGTATAGGATAATATGTCTGCAATAATGCACCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATACGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* * * ** * *
10232 TATCA-GGCAAAGACTAATGGGTGCGACCCTACCAGCACTGATGCACCGGATCCCATCAGAACTC
66 TATCATGG-GAAGACCAA-GGGTGCGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTC
* * * * * * * * *
10296 TGCAGTGAAGCGTGGCTGGGCGAGAGTTGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCATGT
129 CGCAGTTAAGCGTGCCTCGGTGAGAGTAGTACTAGGATGGGTAACCTCTTGGGAAGCCCTCGTGT
*
10361 TGAACCAC-TTTTTCAT--TTT-TTCTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAA
194 TGCACC-CTTTTTTCATAATTTCTT-TTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAA
* * * * * * * *
10422 GCAATCGGTTCATGTAAGCATTACGTCTTATTATGGCTGCGAATAAACAGCAGGTTCAATGAACG
257 GCAATCGGTTCATTTAAGCATTACATCATAGTATGGCTGCGAATGAACAGCATGATCGATGAACG
* *
10487 GCTCGTGAACAAGCTGGATCAAAACT-CGTTTATCTTCGTTCGGTAAGGTTCACAAAGAGAAATA
322 GCTCGTGAACAAGCTGGATC-AAAGTGCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATA
* * * * * *
10551 ATTCTTTCTTCTTCTTTCGAAAATTTTTTAGGTAGGCATCGATTGAAGTAAGTATTAAGTCTTAG
386 ATTATTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAATCTTAG
* ** * * * * * * * * * *
10616 TACGTATGGCTTATACGATCATATGTCGGGAACAATGCACCGGATCCAATGAGATGTGGCTCGTA
451 TACATATGGCGCATACGATAATATGTCTGCAACTATGCTCCGGGTCCATTGAAATGTGGATTGTA
* * * * * *
10681 TTGATTTATCATGCAAA-GACCAATGGGTGCGATCATATCAGCACTAATGCACC-AGATCCCAAC
516 TAGATTTATCATGCAAAGGA-AAATGGGTGCAATCATACCAGCACTAACGCACCGA-ATCCCATC
* * * *
10744 AAAACTCCGCAGTTAAGCGTGCTT-GGACGAGAGTAGTACTAGAGTGGGTGACCTCCTGGGAATC
579 AGAACACCGCAGTTAAGCGTGCTTCCG-CGAGAGTAGTACTAGAGTGGGTGACCACCTGGGAATC
*
10808 CCTTGTGTTGC-ACCATTTTTTCATTTTTGCT-TTTTTATTTTCTTCTCCTTTCGGAATTTCTTA
643 CCTCGTGTTGCAACCA-TTTTTCATTTTT-CTCTTTTTATTTTC-T-T-C--TC-------C-T-
*
10871 TGGGAAGCAATCGGTTCATTTAAGCATTAAATCTTAATATGGTTGCGAATGAACAGCATGATCGA
692 T------C---CGG--------A--ATT---TC-T--TATGGTTGCAAATGAACAGCATGATCGA
* ** *
10936 TGAACGGCTCATGAATAAGCTAGATTAAAGCTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAG
732 TGAACGGCTCATGAACAAGCTAGATTAAAGCTCGTTTATGTTCGCAAGGTAAGCTTCACAAAGAG
11001 AAATAATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGT
797 AAATAATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAGT
11066 CTTAGTACGTA
862 CTTAGTACGTA
* *
11077 TGGCGCATACGATAATATGTCTGGAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATACGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
* * *
11142 TATGATGGGAAGACCAAGGGTGCGATCAAACTCGCACTAATGCACCTGATCCCATCAGAACTCCG
66 TATCATGGGAAGACCAAGGGTGCGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCCG
*
11207 CAGTTAAGCGTGCCTCGGTGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGCCCTCGTGTTG
131 CAGTTAAGCGTGCCTCGGTGAGAGTAGTACTAGGATGGGTAACCTCTTGGGAAGCCCTCGTGTTG
*
11272 CACCCTTTTTTCATAATTTCTTTTTTTTATTTTCTTCTCCTTTCGGAATTTCTTATGGGAAGCAA
196 CACCCTTTTTTCATAATTTCTTTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCAA
* *
11337 TCGGTTCATTTAAGCATTACATCATAGTATGGCTGTGAATGAACAGCATGATCGATGAATGGCTC
261 TCGGTTCATTTAAGCATTACATCATAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCTC
*
11402 GTGAACAAGCTGGATCAAAGTGCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTAT
326 GTGAACAAGCTGGATCAAAGTGCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTAT
*
11467 TTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAGTCTTAGTACAT
391 TTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAATCTTAGTACAT
11532 ATGGCGCATACGATAATATGTCTGCAACTATGCTCCGGGTCCATTGAAATGTGGATTGTATAGAT
456 ATGGCGCATACGATAATATGTCTGCAACTATGCTCCGGGTCCATTGAAATGTGGATTGTATAGAT
* * * *
11597 TTATGATGCAAAGGAAAATGGGTGCGATCATACCAGCACTAACGCACCGGATCCCATCAGAACTC
521 TTATCATGCAAAGGAAAATGGGTGCAATCATACCAGCACTAACGCACCGAATCCCATCAGAACAC
** * *
11662 CGCAGTTAAGCGTGCTTGGGCGATAGTAGTACTAGAGTGGGTGACCTCCTGGGAATCCCTCGTGT
586 CGCAGTTAAGCGTGCTTCCGCGAGAGTAGTACTAGAGTGGGTGACCACCTGGGAATCCCTCGTGT
*
11727 TGC-TCCATTTTTCCATTTTTGCT-TTTTTATTTTCTTCTCCTTCCGGAATTTCTTATGGTTGCA
651 TGCAACCATTTTT-CATTTTT-CTCTTTTTATTTTCTTCTCCTTCCGGAATTTCTTATGGTTGCA
* *
11790 AATGAACAGCATGATCGATGAACGGCTCGTGAACAAGCTGGATTAAAGCTCGTTTATGTTCGCAA
714 AATGAACAGCATGATCGATGAACGGCTCATGAACAAGCTAGATTAAAGCTCGTTTATGTTCGCAA
11855 GGTAAGCTTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGG
779 GGTAAGCTTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGG
11920 TTGAAGTAAGTATTAAGTCTTAGTACGTA
844 TTGAAGTAAGTATTAAGTCTTAGTACGTA
* *
11949 TGGCGCATACTATAATACGTCTGCAACAATGCTCCGGATCTAATGAGATGTGGCTTGTATAGATT
1 TGGCGCATACGATAATACGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
12014 TATCATGGGAAGACCAAAGGGTGCGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCC
66 TATCATGGGAAGACC-AAGGGTGCGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCC
* *
12079 GCAGTTAAGCGTGCTTCGGTGAGAGTAGTACTAGGATGGGTAACCTCTTGGGAAGCCTTCGTGTT
130 GCAGTTAAGCGTGCCTCGGTGAGAGTAGTACTAGGATGGGTAACCTCTTGGGAAGCCCTCGTGTT
*
12144 GCACCCTTTTTTCATATTTTC-TTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCA
195 GCACCCTTTTTTCATAATTTCTTTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCA
*
12208 ATCGGTTCATTTAAGCATTACATCTTAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
260 ATCGGTTCATTTAAGCATTACATCATAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCT
12273 CGTGAACAAGCTGGATCAAAGCT-CGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
325 CGTGAACAAGCTGGATCAAAG-TGCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAATT
* *
12337 TTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAGTATTAAATCTTAGTAC
389 ATTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAATCTTAGTAC
*
12402 GTATGGCGCATACGATAATATGTCTGCAA-TAATGCTCCGGGTCCATTGAAATGTGGATTGTATA
454 ATATGGCGCATACGATAATATGTCTGCAACT-ATGCTCCGGGTCCATTGAAATGTGGATTGTATA
* *
12466 GATTTATCATGCAAA-GACCAATGGGTGCAATCATACCA-CAACTAATGCACCGAATCCCATCAG
518 GATTTATCATGCAAAGGA-AAATGGGTGCAATCATACCAGC-ACTAACGCACCGAATCCCATCAG
* *
12529 AACACCGCAGTTAAGCGTGCTTCCGCGAGAGTAGTACTTG-GATGGGTGACCACCTGGTAAGT-C
581 AACACCGCAGTTAAGCGTGCTTCCGCGAGAGTAGTACTAGAG-TGGGTGACCACCTGGGAA-TCC
* * *
12592 CTCGTGTTGCAACCATTTTTCATTTTTTTCTTTTTATTTTCTTCTCCTTTCGGTATTTCTTATGG
644 CTCGTGTTGCAACCATTTTTCATTTTTCTCTTTTTATTTTCTTCTCCTTCCGGAATTTCTTATGG
12657 GAAGCAATCG
Statistics
Matches: 2248, Mismatches: 174, Indels: 172
0.87 0.07 0.07
Matches are distributed among these distances:
871 6 0.00
872 680 0.30
873 139 0.06
874 1 0.00
875 2 0.00
878 3 0.00
880 1 0.00
888 3 0.00
891 1 0.00
897 1 0.00
898 1 0.00
899 1 0.00
906 2 0.00
907 4 0.00
908 185 0.08
909 130 0.06
910 639 0.28
911 415 0.18
912 7 0.00
913 1 0.00
915 2 0.00
922 1 0.00
923 2 0.00
924 1 0.00
931 1 0.00
933 5 0.00
938 2 0.00
939 2 0.00
941 1 0.00
943 3 0.00
946 4 0.00
947 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (872 bp):
TGGCGCATACGATAATACGTCTGCAACAATGCTCCGGATCCAATGAGATGTGGCTTGTATAGATT
TATCATGGGAAGACCAAGGGTGCGATCAAACTAGCACTAATGCACCGGATCCCATCAGAACTCCG
CAGTTAAGCGTGCCTCGGTGAGAGTAGTACTAGGATGGGTAACCTCTTGGGAAGCCCTCGTGTTG
CACCCTTTTTTCATAATTTCTTTTTTTTATTTTCTTCTCCTTTCAGAATTTCTTATGGGAAGCAA
TCGGTTCATTTAAGCATTACATCATAGTATGGCTGCGAATGAACAGCATGATCGATGAACGGCTC
GTGAACAAGCTGGATCAAAGTGCGTTTATCTTCGCTCGGTAAGGTTCACAAAGAGAAATAATTAT
TTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTTGAAGTAAATATTAAATCTTAGTACAT
ATGGCGCATACGATAATATGTCTGCAACTATGCTCCGGGTCCATTGAAATGTGGATTGTATAGAT
TTATCATGCAAAGGAAAATGGGTGCAATCATACCAGCACTAACGCACCGAATCCCATCAGAACAC
CGCAGTTAAGCGTGCTTCCGCGAGAGTAGTACTAGAGTGGGTGACCACCTGGGAATCCCTCGTGT
TGCAACCATTTTTCATTTTTCTCTTTTTATTTTCTTCTCCTTCCGGAATTTCTTATGGTTGCAAA
TGAACAGCATGATCGATGAACGGCTCATGAACAAGCTAGATTAAAGCTCGTTTATGTTCGCAAGG
TAAGCTTCACAAAGAGAAATAATTTTTTCTTCTTCTTTCGAAATTTTTTTGGGTAGGCATCGGTT
GAAGTAAGTATTAAGTCTTAGTACGTA
Done.