Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015085.1 Corchorus capsularis cultivar CVL-1 contig15106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72194
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:946 original size:455 final size:455
Alignment explanation
Indices: 1--1206 Score: 2004
Period size: 455 Copynumber: 2.6 Consensus size: 455
* *
1 CCTCGTGTTGCACCCCTTTTTCATTTTTTTCTTTTTTATTTTCTT-CTCTTTTCGGAATTTCTTA
1 CCTCGTGTTGCACCCCTTTTTCATTTTTTTCTTTTTTATTTTCTTCCCCTTCT-GGAATTTCTTA
** * * * *
65 TGGGAAGCAATCAGTTCATGTAAGCATTGCGTCTTAGTATGGCTGCGAATGAAAAACATGTTTGA
65 TGGGAAGCAATTGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAGCATGTTCGA
* *
130 TGAACGGCTCATGAACAAGCTGGATCAAAGGTTGTTTATGTTCGCTTGGTAAGGTTCACAAAGAG
130 TGAACGGCTCGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTTGGTAAGGTTCACAAAGAG
*
195 AAATAATTTTTTCTACTTCTTTCGAAATTTTTTTTTGTAGGCATCGGTTGAAGTGAGTATTAAGT
195 AAATAATTTTTTCTTCTTCTTTCGAAA-TTTTTTTTGTAGGCATCGGTTGAAGTGAGTATTAAGT
* * *
260 CATAGTACGTATAACGTATACGATCATATGTGGGCAACAATGCACCGGATCCAATGAGATGTGGT
259 CTTAGTACGTATAGCGTATACGATCATATGTCGGCAACAATGCACCGGATCCAATGAGATGTGGT
* *
325 TTGTATAGATTTATCATGGAAAGACCAATGGGTGCGATTAAACTAGCACTAATGCACAGTATCCC
324 TTGTATAGATTTATCATGGAAAGACCAATGGGTGCGATCAAACTAGCACTAATGCACAGGATCCC
* * *
390 ATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGTATGGGTGACCTCTTGGGAA
389 ATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTAGGAA
455 GT
454 GT
*
457 CCTCGTGTTGCACCCCTTTTTCA-TTTTCTCTTTTTTATTTTCTTCCCCTTCTGGAATTTCTTAT
1 CCTCGTGTTGCACCCCTTTTTCATTTTTTTCTTTTTTATTTTCTTCCCCTTCTGGAATTTCTTAT
*
521 GGGAAGCAATTGGTTCATGTAAGCATTACGTCTTAGTATGACTGCGAATGAACAGCATGTTCGAT
66 GGGAAGCAATTGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAGCATGTTCGAT
586 GAACGGCTCGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTTGGTAAGGTTCACAAAGAGA
131 GAACGGCTCGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTTGGTAAGGTTCACAAAGAGA
* *
651 AATAATTTTTTCTTCTTCTTTCGAAATTTTTTTTATAGGCATCAGTTGAAGTGAGTATTAAGTCT
196 AATAATTTTTTCTTCTTCTTTCGAAATTTTTTTTGTAGGCATCGGTTGAAGTGAGTATTAAGTCT
*
716 TAGTACGTATGGCGTATACGATCATATGTCGGCAACAATGCACCGGATCCAATGAGATGTGGCTT
261 TAGTACGTATAGCGTATACGATCATATGTCGGCAACAATGCACCGGATCCAATGAGATGTGG-TT
* * *
781 T-TATAGATTTATCATGGAAATACCAATGGGTGCGATCAGACTAGCACTAATGCACCGGATCCCA
325 TGTATAGATTTATCATGGAAAGACCAATGGGTGCGATCAAACTAGCACTAATGCACAGGATCCCA
* *
845 TCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTTGTACTGGGATGGGTGACCTCTTAGGAAG
390 TCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTAGGAAG
910 T
455 T
* *
911 CCTCGTGTTGCACCCCTTTTTCATTTTTTTCTTTTTTATTTTCTTCTCCTTCCGGAATTTCTTAT
1 CCTCGTGTTGCACCCCTTTTTCATTTTTTTCTTTTTTATTTTCTTCCCCTTCTGGAATTTCTTAT
976 GGGAAGCAATTGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAGCATGTTCGAT
66 GGGAAGCAATTGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAGCATGTTCGAT
*
1041 GAACGGCTCGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTCGGTAAGGTTCACAAAGAGA
131 GAACGGCTCGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTTGGTAAGGTTCACAAAGAGA
* * * *
1106 AATAATTTTTTCTTCTTCTTTCGAAATTTCTTTGTGTAGGGATCGGTTCAAGTAAGTATTAAGTC
196 AATAATTTTTTCTTCTTCTTTCGAAATTT-TTTTTGTAGGCATCGGTTGAAGTGAGTATTAAGTC
* * *
1171 TTAGTACGTATTGCATACACGATCATATGTCGGCAA
260 TTAGTACGTATAGCGTATACGATCATATGTCGGCAA
1207 TAGGATGGGG
Statistics
Matches: 703, Mismatches: 43, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
454 237 0.34
455 376 0.53
456 90 0.13
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (455 bp):
CCTCGTGTTGCACCCCTTTTTCATTTTTTTCTTTTTTATTTTCTTCCCCTTCTGGAATTTCTTAT
GGGAAGCAATTGGTTCATGTAAGCATTACGTCTTAGTATGGCTGCGAATGAACAGCATGTTCGAT
GAACGGCTCGTGAACAAGCTGGATCAAAGGTCGTTTATGTTCGCTTGGTAAGGTTCACAAAGAGA
AATAATTTTTTCTTCTTCTTTCGAAATTTTTTTTGTAGGCATCGGTTGAAGTGAGTATTAAGTCT
TAGTACGTATAGCGTATACGATCATATGTCGGCAACAATGCACCGGATCCAATGAGATGTGGTTT
GTATAGATTTATCATGGAAAGACCAATGGGTGCGATCAAACTAGCACTAATGCACAGGATCCCAT
CAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTAGGAAGT
Found at i:1611 original size:152 final size:153
Alignment explanation
Indices: 1313--1667 Score: 441
Period size: 152 Copynumber: 2.3 Consensus size: 153
1303 TTAGCTTTTA
* * *
1313 TTTTCTTCTTCTTTCGAAATTTTTTATGGTAGACAATAGGTTCAAGTAAGCATTAAGTCTTATTA
1 TTTTCTTCTTCTTTCGAAATTTTTT-TGGTAGGC-ATCGGTTCAAGTAAGCATTAAGTCTTAGTA
* * * ** *
1378 GGGTTGCAAATGAACAACATGATCAATGAACGGCTCGTGAACAAGCTCGTTTATGTTCGTTTGGT
64 GGGCTCCAAATGAACAACATGATCAATGAACGGCTCGTGAACAAGCTCGTTAACCTTCGTTTCGT
1443 TGGGTTTGTAATTGAGAA-A-TATT
129 TGGGTTTGTAATTGAGAACATTATT
* *
1466 TTTTCTTCTTTTTTAGAAATTTTTTTGGGTAGGCATCGGTTCAAGTAAGCATTAAGTCTTAGTAG
1 TTTTCTTCTTCTTTCGAAATTTTTTT-GGTAGGCATCGGTTCAAGTAAGCATTAAGTCTTAGTAG
* * * * *
1531 GGCTCCAAATGAACAATATGTTCGATGAACGGCTCGTGAACAAGTTCGATTAAACCTT-GTTTCT
65 GGCTCCAAATGAACAACATGATCAATGAACGGCTCGTGAACAAGCTCG-TT-AACCTTCGTTTCG
*
1595 TTGGGTTT-TCAA-TGAGAACTATTTTT
128 TTGGGTTTGT-AATTGAGAAC-ATTATT
*
1621 TTTTCTTCTTGTTTCGAAATTTTTTTTGGTAGGCATCGGTTCAAGTA
1 TTTTCTTCTTCTTTCGAAA-TTTTTTTGGTAGGCATCGGTTCAAGTA
1668 GCACGTATGG
Statistics
Matches: 175, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
152 79 0.45
153 45 0.26
154 4 0.02
155 40 0.23
156 7 0.04
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (153 bp):
TTTTCTTCTTCTTTCGAAATTTTTTTGGTAGGCATCGGTTCAAGTAAGCATTAAGTCTTAGTAGG
GCTCCAAATGAACAACATGATCAATGAACGGCTCGTGAACAAGCTCGTTAACCTTCGTTTCGTTG
GGTTTGTAATTGAGAACATTATT
Found at i:3361 original size:47 final size:46
Alignment explanation
Indices: 3292--3380 Score: 151
Period size: 47 Copynumber: 1.9 Consensus size: 46
3282 CCTAGCAGGA
*
3292 CCTTGCTACTACCACATCTCTCATAAAGGCCCAAAAGCACACATGGG
1 CCTTGCTACTACCACACCTCTCATAAAGGCCCAAAA-CACACATGGG
*
3339 CCTTGCTACTACCACACCTCTCATGAAGGCCCAAAACACACA
1 CCTTGCTACTACCACACCTCTCATAAAGGCCCAAAACACACA
3381 CAGGCCCAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 6 0.15
47 34 0.85
ACGTcount: A:0.33, C:0.37, G:0.12, T:0.18
Consensus pattern (46 bp):
CCTTGCTACTACCACACCTCTCATAAAGGCCCAAAACACACATGGG
Found at i:5444 original size:10 final size:10
Alignment explanation
Indices: 5420--5463 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
5410 AATTTAATGC
*
5420 TTAATTTGTT
1 TTAATTTGTA
5430 TTAATTTGTA
1 TTAATTTGTA
*
5440 ATAATTTAGTA
1 TTAATTT-GTA
*
5451 TTAATTAGTA
1 TTAATTTGTA
5461 TTA
1 TTA
5464 GTTAATTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (10 bp):
TTAATTTGTA
Found at i:16266 original size:2 final size:2
Alignment explanation
Indices: 16259--16283 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
16249 GATTATTATT
16259 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
16284 TGAAAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32097 original size:48 final size:48
Alignment explanation
Indices: 32026--32168 Score: 259
Period size: 48 Copynumber: 3.0 Consensus size: 48
32016 TACACTTTTG
*
32026 GCATTACATATTTTATGGCTTAGTTTTATTTAGTAATTTAGCATTATC
1 GCATTACATATTTTATGGCTTAGTTTCATTTAGTAATTTAGCATTATC
* *
32074 GCATTACATATTTTATGGCTTAGTTTCATTTATTAATTTAACATTATC
1 GCATTACATATTTTATGGCTTAGTTTCATTTAGTAATTTAGCATTATC
32122 GCATTACATATTTTATGGCTTAGTTTCATTTAGTAATTTAGCATTAT
1 GCATTACATATTTTATGGCTTAGTTTCATTTAGTAATTTAGCATTAT
32169 TTGCATTTCA
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 90 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (48 bp):
GCATTACATATTTTATGGCTTAGTTTCATTTAGTAATTTAGCATTATC
Found at i:32751 original size:47 final size:44
Alignment explanation
Indices: 32686--32980 Score: 258
Period size: 41 Copynumber: 6.7 Consensus size: 44
32676 AATTTCTGGT
* * *
32686 TTTGCCCTTCTCCACCGGAAGGTGTTGTCTAAAGTTACATTTCCCAG
1 TTTGCCCTTCCCCTCCGGAAGGTGTTGT-T-TAGTTA-ATTTCCCAG
* * *
32733 TTTGCCCTTCCCCTCCGGAAGGTGTTGTCTAGTTGTTTAAATTCCCAA
1 TTTGCCCTTCCCCTCCGGAAGGTGTTGT-T--TAG-TTAATTTCCCAG
* * *
32781 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAGTTTACATTTCCCGG
1 TTTGCCCTTCCCCTCCGGAAGGTGTTGT-T-TAG-TTA-ATTTCCCAG
* *
32829 TTTGCCCAT-CCCACCGGAAGGTGTTGTTTAG----TTTCCCAG
1 TTTGCCCTTCCCCTCCGGAAGGTGTTGTTTAGTTAATTTCCCAG
32868 TTTGCCCTTCCCCGT-CGGAAGGTGTTGTTTAG-T--TTTCCCAG
1 TTTGCCCTTCCCC-TCCGGAAGGTGTTGTTTAGTTAATTTCCCAG
*
32909 TTTGCCCTTCCTCGT-CGGAAGGTGTTGTTTAG-T--TTTCCCAG
1 TTTGCCCTTCC-CCTCCGGAAGGTGTTGTTTAGTTAATTTCCCAG
32950 TTTGCCCTTCCCCAT-CGGAAGGTGTTGTTTA
1 TTTGCCCTTCCCC-TCCGGAAGGTGTTGTTTA
32981 AGGTCGGAAG
Statistics
Matches: 219, Mismatches: 21, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
39 15 0.07
40 21 0.10
41 74 0.34
42 1 0.00
45 2 0.01
46 1 0.00
47 51 0.23
48 51 0.23
49 3 0.01
ACGTcount: A:0.15, C:0.27, G:0.22, T:0.37
Consensus pattern (44 bp):
TTTGCCCTTCCCCTCCGGAAGGTGTTGTTTAGTTAATTTCCCAG
Found at i:32849 original size:95 final size:95
Alignment explanation
Indices: 32686--32861 Score: 291
Period size: 95 Copynumber: 1.9 Consensus size: 95
32676 AATTTCTGGT
* * *
32686 TTTGCCCTTCTCCACCGGAAGGTGTTGTCTAAAGTTACATTTCCCAGTTTGCCCTTCCCCTCCGG
1 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAGTTACATTTCCCAGTTTGCCCATCCCCACCGG
32751 AAGGTGTTGTCTAGTTGTTTAAATTCCCAA
66 AAGGTGTTGTCTAGTTGTTTAAATTCCCAA
*
32781 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAGTTTACATTTCCCGGTTTGCCCAT-CCCACCG
1 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAG-TTACATTTCCCAGTTTGCCCATCCCCACCG
*
32845 GAAGGTGTTGTTTAGTT
65 GAAGGTGTTGTCTAGTT
32862 TCCCAGTTTG
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
95 55 0.73
96 20 0.27
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.35
Consensus pattern (95 bp):
TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAGTTACATTTCCCAGTTTGCCCATCCCCACCGG
AAGGTGTTGTCTAGTTGTTTAAATTCCCAA
Found at i:33095 original size:50 final size:50
Alignment explanation
Indices: 32982--33201 Score: 293
Period size: 50 Copynumber: 4.4 Consensus size: 50
32972 TGTTGTTTAA
* * *
32982 GGTCGGAAGGTCCTTCTTTTCCTTATTTGTTTCCCAAAAT-CCCCTTCCC
1 GGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATGCCCCTTCCC
33031 GGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATGCCCCTTCCC
1 GGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATGCCCCTTCCC
* * * * *
33081 GGTCGGTAGGTCCCTGTTTTCTTTGTTTGTTTCCAAAAATGCCCTTTCCT
1 GGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATGCCCCTTCCC
* * * *
33131 GGTTGGAAGGT-CCTAGTTTTCTTTCTTTGTTCCCCAAAATGCCTCTTCCC
1 GGTCGGAAGGTCCCT-GTTTTCTTTATTTGTTTCCCAAAATGCCCCTTCCC
*
33181 GGTCGGAAGGT-CCAGTTTTCT
1 GGTCGGAAGGTCCCTGTTTTCT
33202 CTTCGCATTT
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
49 47 0.31
50 104 0.69
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.40
Consensus pattern (50 bp):
GGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATGCCCCTTCCC
Found at i:36603 original size:19 final size:18
Alignment explanation
Indices: 36579--36615 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
36569 TTGAAGATTT
36579 CTTGAAGATAATTTGAAGA
1 CTTGAAGATAA-TTGAAGA
*
36598 CTTGAAGATCATTGAAGA
1 CTTGAAGATAATTGAAGA
36616 ATTATTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (18 bp):
CTTGAAGATAATTGAAGA
Found at i:41937 original size:14 final size:15
Alignment explanation
Indices: 41909--41937 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
41899 GTGTGAATTC
41909 AAATTGATCTTTTGA
1 AAATTGATCTTTTGA
41924 AAATTGAT-TTTTGA
1 AAATTGATCTTTTGA
41938 TTAACTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (15 bp):
AAATTGATCTTTTGA
Found at i:44907 original size:48 final size:48
Alignment explanation
Indices: 44836--44930 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
44826 TACACTTTTG
44836 GCATTACATATTTTATGGCTTAGTTTCATCTAGTAATTTAGCATTATC
1 GCATTACATATTTTATGGCTTAGTTTCATCTAGTAATTTAGCATTATC
*
44884 GCATTACATATTTTATGGCTTAGTTTCATTTAGTAATTTAGCATTAT
1 GCATTACATATTTTATGGCTTAGTTTCATCTAGTAATTTAGCATTAT
44931 TTGCATTTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (48 bp):
GCATTACATATTTTATGGCTTAGTTTCATCTAGTAATTTAGCATTATC
Found at i:45100 original size:15 final size:15
Alignment explanation
Indices: 45080--45111 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
45070 AATTAATACC
45080 ATAATTAGAAGGAAT
1 ATAATTAGAAGGAAT
*
45095 ATAATTAGAAGGCAT
1 ATAATTAGAAGGAAT
45110 AT
1 AT
45112 TCCAATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.19, T:0.28
Consensus pattern (15 bp):
ATAATTAGAAGGAAT
Found at i:48455 original size:48 final size:48
Alignment explanation
Indices: 48403--48613 Score: 208
Period size: 48 Copynumber: 4.6 Consensus size: 48
48393 AATTTCTGGT
* *
48403 TTTGCCCTTCCCCACCGGAAAGTGTTATCTAAAATTTACATTTCCCAG
1 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAATTTACATTTCCCAG
*** * *
48451 TTTGCCCTT-CCCACCGGAAGGTGTTGTCTAGTTGTTTA-AATTCCCAA
1 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTA-AAATTTACATTTCCCAG
* * * *
48498 TTTGCCCTTCCTCACCGGAAGGTGTTGTCTAAATTTTACATTTCTCGG
1 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAATTTACATTTCCCAG
* * *
48546 TTTGCCATTCCCCACCGGAAGGT-TT-TGT----TTT--GTTTCCCAG
1 TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAATTTACATTTCCCAG
*
48586 TTTGCCCTTCCCCATCGGAAGGTGTTGT
1 TTTGCCCTTCCCCACCGGAAGGTGTTGT
48614 TTAAGTTTCC
Statistics
Matches: 135, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
40 27 0.20
41 2 0.01
42 4 0.03
46 2 0.01
47 41 0.30
48 59 0.44
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (48 bp):
TTTGCCCTTCCCCACCGGAAGGTGTTGTCTAAAATTTACATTTCCCAG
Found at i:48634 original size:41 final size:40
Alignment explanation
Indices: 48545--48796 Score: 317
Period size: 41 Copynumber: 6.2 Consensus size: 40
48535 ACATTTCTCG
* * * *
48545 GTTTGCCATTCCCCACCGGAAGGTTTTGTTTTGTTTCCCA
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAGTTTCCCA
48585 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAAGTTTCCCA
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTT-AGTTTCCCA
* *
48626 ATTTGCCCTTCCCCGTCGGAAGGTGTTGTTTAGTTTTCCCA
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAG-TTTCCCA
* *
48667 GTTTGCCCTTTCCCGTCGGAAGGTGTTGTTTAAGTTT-CCA
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTT-AGTTTCCCA
* *
48707 GTTTGCCCTTCCCCATCGAAAGGTGTTGTTTAGTTTTCCTA
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAG-TTTCCCA
* * * ** *
48748 GTTTGCCCTTCCCCACCGGAAGTTATTGTTTACATTCCTA
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAGTTTCCCA
48788 GTTTGCCCT
1 GTTTGCCCT
48797 ACCATTTTGG
Statistics
Matches: 189, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.01
40 79 0.42
41 106 0.56
42 2 0.01
ACGTcount: A:0.13, C:0.27, G:0.21, T:0.39
Consensus pattern (40 bp):
GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAGTTTCCCA
Found at i:48712 original size:81 final size:81
Alignment explanation
Indices: 48545--48796 Score: 339
Period size: 81 Copynumber: 3.1 Consensus size: 81
48535 ACATTTCTCG
* * * *
48545 GTTTGCCATTCCCCACCGGAAGGTTTTGTTTTG-TTTCCCAGTTTGCCCTTCCCCATCGGAAGGT
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAGTTTTCCCAGTTTGCCCTTCCCCATCGGAAGGT
48609 GTTGTTTAAGTTTCCCA
66 GTTGTTTAAGTTT-CCA
* * * *
48626 ATTTGCCCTTCCCCGTCGGAAGGTGTTGTTTAGTTTTCCCAGTTTGCCCTTTCCCGTCGGAAGGT
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAGTTTTCCCAGTTTGCCCTTCCCCATCGGAAGGT
48691 GTTGTTTAAGTTTCCA
66 GTTGTTTAAGTTTCCA
* * * *
48707 GTTTGCCCTTCCCCATCGAAAGGTGTTGTTTAGTTTTCCTAGTTTGCCCTTCCCCACCGGAAGTT
1 GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAGTTTTCCCAGTTTGCCCTTCCCCATCGGAAGGT
*
48772 ATTGTTTACA--TTCCTA
66 GTTGTTTA-AGTTTCC-A
48788 GTTTGCCCT
1 GTTTGCCCT
48797 ACCATTTTGG
Statistics
Matches: 151, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
80 4 0.03
81 104 0.69
82 43 0.28
ACGTcount: A:0.13, C:0.27, G:0.21, T:0.39
Consensus pattern (81 bp):
GTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAGTTTTCCCAGTTTGCCCTTCCCCATCGGAAGGT
GTTGTTTAAGTTTCCA
Found at i:48715 original size:122 final size:121
Alignment explanation
Indices: 48561--48796 Score: 323
Period size: 122 Copynumber: 1.9 Consensus size: 121
48551 CATTCCCCAC
* * *
48561 CGGAAGGTTTTGTTTTGTTTCCCAGTTTGCCCTTCCCCATCGGAAGGTGTTGTTTAAG-TTTCCC
1 CGGAAGGTGTTGTTTAGTTTCCCAGTTTGCCCTTCCCCATCGAAAGGTGTTGTTT-AGTTTTCCC
** * **
48625 AATTTGCCCTTCCCCGTCGGAAGGTGTTGTTTAGTTTTCCCAGTTTGCCCTTTCCCGT
65 AATTTGCCCTTCCCCACCGGAAGGTATTGTTTA-CATTCCCAGTTTGCCCTTTCCCGT
*
48683 CGGAAGGTGTTGTTTAAGTTT-CCAGTTTGCCCTTCCCCATCGAAAGGTGTTGTTTAGTTTTCCT
1 CGGAAGGTGTTGTTT-AGTTTCCCAGTTTGCCCTTCCCCATCGAAAGGTGTTGTTTAGTTTTCCC
* * *
48747 AGTTTGCCCTTCCCCACCGGAAGTTATTGTTTACATTCCTAGTTTGCCCT
65 AATTTGCCCTTCCCCACCGGAAGGTATTGTTTACATTCCCAGTTTGCCCT
48797 ACCATTTTGG
Statistics
Matches: 100, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
121 16 0.16
122 80 0.80
123 4 0.04
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.40
Consensus pattern (121 bp):
CGGAAGGTGTTGTTTAGTTTCCCAGTTTGCCCTTCCCCATCGAAAGGTGTTGTTTAGTTTTCCCA
ATTTGCCCTTCCCCACCGGAAGGTATTGTTTACATTCCCAGTTTGCCCTTTCCCGT
Found at i:49101 original size:50 final size:50
Alignment explanation
Indices: 48875--49106 Score: 338
Period size: 50 Copynumber: 4.6 Consensus size: 50
48865 CTTGTTCACG
* * * *
48875 AAATGCCCCTTCCCGGTCGGAAGGCCCCTGTTTTCTTTATTTGTTTTCAA
1 AAATGCCCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATCTGTTTCCCA
* *
48925 AAATGCCCCTTCCCGGTCGGAAAGTCACTGTTTTCTTTATCTGTTTCCCA
1 AAATGCCCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATCTGTTTCCCA
** *
48975 AAATGCCCCTTCCTAGTCGGAAGGTCACTGTTTTCTTTATCTGTTTCCCA
1 AAATGCCCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATCTGTTTCCCA
* * * *
49025 AAATGCCCCTTCCTGGTCGAAAGGTCCCTGTTTTCCTTATTTGTTTCCCA
1 AAATGCCCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATCTGTTTCCCA
*
49075 AAATGCCCCTTCCCGGTCGGAAGGTCCATGTT
1 AAATGCCCCTTCCCGGTCGGAAGGTCCCTGTT
49107 CCCCTTCCCG
Statistics
Matches: 165, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 165 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (50 bp):
AAATGCCCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATCTGTTTCCCA
Found at i:49157 original size:77 final size:76
Alignment explanation
Indices: 49030--49182 Score: 216
Period size: 77 Copynumber: 2.0 Consensus size: 76
49020 TCCCAAAATG
* * * *
49030 CCCCTTCCTGGTCGAAAGGTCCCTGTTTTCCTTATTTGTTTCCCAAAATGCCCCTTCCCGGTCGG
1 CCCCTTCCCGATCGAAAGGTCCCTATTTTCCTTAATTGTTTCCCAAAATG-CCCTTCCCGGTCGG
49095 AAGGTCCATGTT
65 AAGGTCCATGTT
* * * *
49107 CCCCTTCCCGATCGGAAGGTCCCTATTTTCTTTAATTGTTTCCCAAAATGCCCTTCCTGGTCGGT
1 CCCCTTCCCGATCGAAAGGTCCCTATTTTCCTTAATTGTTTCCCAAAATGCCCTTCCCGGTCGGA
*
49172 AGGTCCCTGTT
66 AGGTCCATGTT
49183 TTCTTTGTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
76 23 0.34
77 44 0.66
ACGTcount: A:0.14, C:0.32, G:0.19, T:0.35
Consensus pattern (76 bp):
CCCCTTCCCGATCGAAAGGTCCCTATTTTCCTTAATTGTTTCCCAAAATGCCCTTCCCGGTCGGA
AGGTCCATGTT
Found at i:49185 original size:49 final size:49
Alignment explanation
Indices: 49108--49285 Score: 180
Period size: 49 Copynumber: 3.6 Consensus size: 49
49098 GTCCATGTTC
* * *
49108 CCCTTCCCGATCGGAAGGTCCCTATTTTCTTTAATTGTTTCCCAAAATG
1 CCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATG
* * * *
49157 CCCTTCCTGGTCGGTAGGTCCCTGTTTTCTTTGTTTGTTTCCAAAAATG
1 CCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATG
* * * * * *
49206 CCCTTTCCTGGTTGGAAGGT-CTTAGTCTTCTTTCTTTGTTCCCCAAAATG
1 CCC-TTCCCGGTCGGAAGGTCCCT-GTTTTCTTTATTTGTTTCCCAAAATG
* *
49256 CCCCTTCCCGGTCGGAATGT-CCAGTTTTCT
1 -CCCTTCCCGGTCGGAAGGTCCCTGTTTTCT
49286 CTTCACATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
49 53 0.50
50 50 0.47
51 3 0.03
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.39
Consensus pattern (49 bp):
CCCTTCCCGGTCGGAAGGTCCCTGTTTTCTTTATTTGTTTCCCAAAATG
Found at i:49207 original size:126 final size:127
Alignment explanation
Indices: 48991--49226 Score: 359
Period size: 126 Copynumber: 1.9 Consensus size: 127
48981 CCCTTCCTAG
*
48991 TCGGAAGGTCACTGTTTTCTTTATCTGTTTCCCAAAATGCCCCTTCCTGGTCGAAAGGTCCCTGT
1 TCGGAAGGTCACTATTTTCTTTATCTGTTTCCCAAAATGCCCCTTCCTGGTCGAAAGGTCCCTGT
*
49056 TTTCCTTATTTGTTTCCCAAAATGCCCCTTCCCGGTCGGAAGGTCCATGTTCCCCTTCCCGA
66 TTTCCTTATTTGTTTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCCATGTTCCCCTTCCCGA
* **
49118 TCGGAAGGTCCCTATTTTCTTTAAT-TGTTTCCCAAAATG-CCCTTCCTGGTCGGTAGGTCCCTG
1 TCGGAAGGTCACTATTTTCTTT-ATCTGTTTCCCAAAATGCCCCTTCCTGGTCGAAAGGTCCCTG
* * * * *
49181 TTTTCTTTGTTTGTTTCCAAAAATGCCCTTTCCTGGTTGGAAGGTC
65 TTTTCCTTATTTGTTTCCAAAAATGCCCCTTCCCGGTCGGAAGGTC
49227 TTAGTCTTCT
Statistics
Matches: 98, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
126 62 0.63
127 34 0.35
128 2 0.02
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.37
Consensus pattern (127 bp):
TCGGAAGGTCACTATTTTCTTTATCTGTTTCCCAAAATGCCCCTTCCTGGTCGAAAGGTCCCTGT
TTTCCTTATTTGTTTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCCATGTTCCCCTTCCCGA
Found at i:49237 original size:50 final size:49
Alignment explanation
Indices: 49108--49277 Score: 171
Period size: 50 Copynumber: 3.4 Consensus size: 49
49098 GTCCATGTTC
* * * * **
49108 CCCTTCCCGATCGGAAGGTCCCTATTTTCTTTAATTGTTTCCCAAAATG
1 CCCTTCCTGGTCGGAAGGTCCCTGTCTTCTTTCTTTGTTTCCCAAAATG
* * * *
49157 CCCTTCCTGGTCGGTAGGTCCCTGTTTTCTTTGTTTGTTTCCAAAAATG
1 CCCTTCCTGGTCGGAAGGTCCCTGTCTTCTTTCTTTGTTTCCCAAAATG
* * *
49206 CCCTTTCCTGGTTGGAAGGT-CTTAGTCTTCTTTCTTTGTTCCCCAAAATG
1 CCC-TTCCTGGTCGGAAGGTCCCT-GTCTTCTTTCTTTGTTTCCCAAAATG
* *
49256 CCCCTTCCCGGTCGGAATGTCC
1 -CCCTTCCTGGTCGGAAGGTCC
49278 AGTTTTCTCT
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
49 47 0.47
50 49 0.49
51 4 0.04
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.38
Consensus pattern (49 bp):
CCCTTCCTGGTCGGAAGGTCCCTGTCTTCTTTCTTTGTTTCCCAAAATG
Found at i:49253 original size:176 final size:177
Alignment explanation
Indices: 48930--49278 Score: 488
Period size: 176 Copynumber: 2.0 Consensus size: 177
48920 TTCAAAAATG
* *
48930 CCCCTTCCCGGTCGGAAAGTCACTGTTTTCTTTATCTGTTTCCCAAAATGCCCCTTCCTAGTCGG
1 CCCCTTCCCGATCGGAAAGTCACTATTTTCTTTATCTGTTTCCCAAAATGCCCCTTCCTAGTCGG
* *
48995 AAGGTCACTGTTTTCTTTATCTGTTTCCCAAAATGCCCCTTCCTGGTCGAAAGGTCCCTGTTTTC
66 AAGGTCACTGTTTTCTTTATCTGTTTCCAAAAATGCCCCTTCCTGGTCGAAAGGTCCCTGTCTTC
*
49060 CTTATTTGTTTCCCAAAATGCCCCTTCCCGGTCGGAAGGTCCATGTT
131 CTTATTTGTTCCCCAAAATGCCCCTTCCCGGTCGGAAGGTCCATGTT
* * *
49107 CCCCTTCCCGATCGGAAGGTCCCTATTTTCTTTAAT-TGTTTCCCAAAATG-CCCTTCCTGGTCG
1 CCCCTTCCCGATCGGAAAGTCACTATTTTCTTT-ATCTGTTTCCCAAAATGCCCCTTCCTAGTCG
* * * * * * * *
49170 GTAGGTCCCTGTTTTCTTTGTTTGTTTCCAAAAATGCCCTTTCCTGGTTGGAAGGT-CTTAGTCT
65 GAAGGTCACTGTTTTCTTTATCTGTTTCCAAAAATGCCCCTTCCTGGTCGAAAGGTCCCT-GTCT
* * *
49234 TCTTTCTTTGTTCCCCAAAATGCCCCTTCCCGGTCGGAATGTCCA
129 TCCTTATTTGTTCCCCAAAATGCCCCTTCCCGGTCGGAAGGTCCA
49279 GTTTTCTCTT
Statistics
Matches: 151, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
175 2 0.01
176 104 0.69
177 43 0.28
178 2 0.01
ACGTcount: A:0.16, C:0.30, G:0.18, T:0.37
Consensus pattern (177 bp):
CCCCTTCCCGATCGGAAAGTCACTATTTTCTTTATCTGTTTCCCAAAATGCCCCTTCCTAGTCGG
AAGGTCACTGTTTTCTTTATCTGTTTCCAAAAATGCCCCTTCCTGGTCGAAAGGTCCCTGTCTTC
CTTATTTGTTCCCCAAAATGCCCCTTCCCGGTCGGAAGGTCCATGTT
Found at i:52599 original size:2 final size:2
Alignment explanation
Indices: 52592--52626 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
52582 CTAGCACAGC
52592 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52627 CTTTTATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:52634 original size:15 final size:15
Alignment explanation
Indices: 52592--52626 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
52582 CTAGCACAGC
52592 ATATATA-TATATAT
1 ATATATATTATATAT
52606 ATATATATTATATAT
1 ATATATATTATATAT
52621 ATATAT
1 ATATAT
52627 CTTTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATATATTATATAT
Found at i:52634 original size:17 final size:17
Alignment explanation
Indices: 52592--52626 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
52582 CTAGCACAGC
52592 ATATA-TATATATATAT
1 ATATATTATATATATAT
52608 ATATATTATATATATAT
1 ATATATTATATATATAT
52625 AT
1 AT
52627 CTTTTATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATATTATATATATAT
Found at i:53928 original size:56 final size:56
Alignment explanation
Indices: 53866--54027 Score: 245
Period size: 58 Copynumber: 2.9 Consensus size: 56
53856 GAAGAAAAAT
53866 TGCCTCTGTGTTTAGGGACTTATGAATTGCCCTTGTGTTTGAGGACTTTTG-AGAAA
1 TGCCTCTGTGTTTAGGGACTTATGAA-TGCCCTTGTGTTTGAGGACTTTTGAAGAAA
* * *
53922 TGCCTCTGTGTTTAGGGACTTATGAATGCCCATGTGTTTGGGGACTTTTTGATAGAGA
1 TGCCTCTGTGTTTAGGGACTTATGAATGCCCTTGTGTTTGAGGAC-TTTTGA-AGAAA
* *
53980 TGCCTCTGTGTTTAGGGACTTATGAATGCCCTGGTGTTCGAGGACTTT
1 TGCCTCTGTGTTTAGGGACTTATGAATGCCCTTGTGTTTGAGGACTTT
54028 AATTATTGGG
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
55 17 0.18
56 31 0.32
57 3 0.03
58 45 0.47
ACGTcount: A:0.18, C:0.15, G:0.28, T:0.38
Consensus pattern (56 bp):
TGCCTCTGTGTTTAGGGACTTATGAATGCCCTTGTGTTTGAGGACTTTTGAAGAAA
Found at i:54016 original size:26 final size:25
Alignment explanation
Indices: 53866--54017 Score: 126
Period size: 26 Copynumber: 5.4 Consensus size: 25
53856 GAAGAAAAAT
53866 TGCCTCTGTGTTTAGGGACTTATGAA
1 TGCC-CTGTGTTTAGGGACTTATGAA
*
53892 TTGCCCTTGTGTTT-GAGGACTTTTGAGAAA
1 -TGCCC-TGTGTTTAG-GGACTTAT--G-AA
53922 TGCCTCTGTGTTTAGGGACTTATGAA
1 TGCC-CTGTGTTTAGGGACTTATGAA
*
53948 TGCCCATGTGTTTGGGGACTTTTTGATAGAGA
1 TGCCC-TGTGTTTAGGGAC---TT-AT-GA-A
53980 TGCCTCTGTGTTTAGGGACTTATGAA
1 TGCC-CTGTGTTTAGGGACTTATGAA
54006 TGCCCTGGTGTT
1 TGCCCT-GTGTT
54018 CGAGGACTTT
Statistics
Matches: 105, Mismatches: 4, Indels: 33
0.74 0.03 0.23
Matches are distributed among these distances:
25 3 0.03
26 30 0.29
27 21 0.20
28 2 0.02
29 23 0.22
30 6 0.06
31 2 0.02
32 17 0.16
33 1 0.01
ACGTcount: A:0.18, C:0.15, G:0.28, T:0.39
Consensus pattern (25 bp):
TGCCCTGTGTTTAGGGACTTATGAA
Found at i:58833 original size:16 final size:16
Alignment explanation
Indices: 58812--58860 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
58802 AAAAGTTTGA
58812 TGGATATTTGAATATT
1 TGGATATTTGAATATT
*
58828 TGGATATTTG-GTATT
1 TGGATATTTGAATATT
*
58843 TGGGTATGTATGAATATT
1 TGGATAT-T-TGAATATT
58861 CTAAGTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 10 0.37
16 11 0.41
17 2 0.07
18 4 0.15
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (16 bp):
TGGATATTTGAATATT
Found at i:58844 original size:7 final size:8
Alignment explanation
Indices: 58812--58845 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
58802 AAAAGTTTGA
58812 TGGATATT
1 TGGATATT
*
58820 TGAATATT
1 TGGATATT
58828 TGGATATT
1 TGGATATT
58836 TGG-TATT
1 TGGATATT
58843 TGG
1 TGG
58846 GTATGTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (8 bp):
TGGATATT
Found at i:66514 original size:56 final size:57
Alignment explanation
Indices: 66452--66613 Score: 238
Period size: 58 Copynumber: 2.8 Consensus size: 57
66442 GCAGAAAAAT
66452 TGCCTCTGTGTTTAGGGACTTATGAATTGCCCTTGTGTTTGAGGA-TTTTT-GAGAAA
1 TGCCTCTGTGTTTAGGGACTTATGAA-TGCCCTTGTGTTTGAGGACTTTTTAGAGAAA
* * *
66508 TGCCTCTGTGTTTAGGGACTTATGAATGCCCATGTGTTTGAGGACTTTTTTATAGAGA
1 TGCCTCTGTGTTTAGGGACTTATGAATGCCCTTGTGTTTGAGGAC-TTTTTAGAGAAA
* * *
66566 TGCTTCTGTGTTTAGGGACTTATGAATGCCCTGGTGTTCGAGGACTTT
1 TGCCTCTGTGTTTAGGGACTTATGAATGCCCTTGTGTTTGAGGACTTT
66614 AATTATTGGG
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
55 17 0.18
56 26 0.27
57 8 0.08
58 45 0.47
ACGTcount: A:0.19, C:0.14, G:0.27, T:0.40
Consensus pattern (57 bp):
TGCCTCTGTGTTTAGGGACTTATGAATGCCCTTGTGTTTGAGGACTTTTTAGAGAAA
Done.