Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015086.1 Corchorus capsularis cultivar CVL-1 contig15107, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47105

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144--245
33
3.2
33
86
4
138
37
17
11
33
1.86
281--389
33
3.3
33
79
5
139
40
21
12
25
1.89
256--396
66
2.1
66
93
0
210
39
19
12
28
1.88
1878--1911
8
4.1
8
85
7
50
23
2
14
58
1.50
3882--3932
26
1.9
27
84
11
70
39
11
33
15
1.84
7072--7100
2
14.5
2
100
0
58
51
0
0
48
1.00
10721--10824
40
2.6
39
92
1
163
44
8
16
30
1.78
22277--23382
437
2.5
437
92
2
1804
41
18
14
25
1.88
24080--24483
166
2.4
166
84
1
540
38
16
14
30
1.88
24796--24881
45
1.9
45
90
4
138
29
22
15
33
1.94
25420--25486
26
2.6
27
74
9
68
32
20
1
44
1.61
27177--27202
2
13.0
2
100
0
52
50
0
0
50
1.00
27314--27401
31
2.9
30
75
6
81
32
17
12
37
1.87
27458--27530
31
2.4
30
83
4
83
35
13
16
34
1.88
31587--31651
33
2.0
33
96
0
121
15
15
23
46
1.83
39554--39607
21
2.6
21
76
2
56
20
31
38
9
1.84
41261--41330
6
11.5
6
95
1
95
21
1
0
77
0.85
44781--44829
26
1.9
25
83
4
62
48
12
20
18
1.79

Tables:   1

The End!