Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015087.1 Corchorus capsularis cultivar CVL-1 contig15108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58784

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2750--2826
30
2.5
31
79
14
86
41
19
10
28
1.84
2814--2907
33
2.8
33
81
0
125
44
20
9
25
1.81
4390--4423
8
4.1
8
85
7
50
23
2
14
58
1.50
5726--5775
21
2.4
21
75
0
55
22
28
40
10
1.86
9288--9406
36
3.4
34
72
19
104
28
16
8
46
1.76
9313--9416
32
3.1
32
76
10
109
29
16
7
46
1.75
9971--10048
11
6.7
11
84
11
93
8
24
7
58
1.54
9971--10048
23
3.3
23
84
7
104
8
24
7
58
1.54
9971--10049
12
6.8
12
87
9
110
8
24
7
59
1.53
9420--10448
35
29.1
34
80
8
861
24
22
10
43
1.84
9420--10448
71
14.5
69
80
8
885
24
22
10
43
1.84
10437--10530
40
2.3
40
76
3
100
26
17
8
47
1.75
11718--12063
44
7.9
44
85
5
479
32
20
22
23
1.98
11718--12067
87
4.0
87
91
3
517
32
21
22
24
1.98
15596--15935
129
2.7
124
90
5
508
29
21
19
29
1.98
19330--19427
9
11.4
9
67
22
50
11
22
35
30
1.89
19351--19427
16
4.8
16
86
0
91
10
22
37
29
1.87
19883--19961
29
2.7
29
86
4
104
29
24
11
35
1.90
19906--19963
29
2.0
29
96
0
107
25
18
13
41
1.88
21372--21400
15
1.9
15
100
0
58
62
0
0
37
0.96
21365--21414
25
2.0
25
92
0
82
62
2
0
36
1.07
30687--30751
30
2.2
30
97
0
121
18
38
29
13
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34457--34568
31
3.8
29
80
8
109
40
8
15
36
1.76
39216--39449
35
6.7
35
86
3
294
32
16
10
39
1.83
39216--39449
105
2.2
105
90
1
353
32
16
10
39
1.83
40050--40101
26
2.0
27
82
14
65
63
15
5
15
1.48
55832--55927
39
2.5
39
91
1
149
42
13
10
33
1.78
58371--58416
19
2.3
20
92
7
85
36
0
4
58
1.18

Tables:   1

The End!