Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015088.1 Corchorus capsularis cultivar CVL-1 contig15109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90822

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
533--684
68
2.2
69
92
1
252
50
15
15
18
1.79
11902--12091
21
9.4
20
83
12
221
52
4
21
22
1.65
11924--11958
15
2.3
15
90
9
54
57
5
14
22
1.59
11939--12100
42
3.8
42
93
2
254
51
4
21
22
1.65
11908--12091
63
3.0
63
89
8
267
52
4
20
22
1.66
12162--12334
34
5.1
34
87
6
242
54
2
24
18
1.55
12222--12317
7
14.0
7
66
12
56
53
2
26
18
1.56
15817--16087
144
1.9
146
88
2
420
30
26
13
29
1.94
16692--16756
31
2.1
31
97
0
121
21
15
21
41
1.90
19040--19074
1
35.0
1
94
0
61
97
2
0
0
0.19
19040--19079
13
3.1
13
92
0
62
92
7
0
0
0.38
31918--32148
115
2.0
115
95
0
417
31
10
12
45
1.77
33170--33273
53
2.0
51
92
3
172
44
25
10
19
1.83
36345--36417
35
2.1
35
100
0
146
28
38
10
21
1.88
44641--44673
17
1.9
17
88
11
50
24
24
6
45
1.75
53464--53553
33
2.7
33
91
0
144
35
24
3
36
1.72
63972--64005
13
2.6
13
82
17
52
70
0
0
29
0.87
65408--65494
44
2.0
44
100
0
174
32
26
11
29
1.91
66208--66280
22
3.3
22
79
11
94
19
46
26
8
1.77
78633--78724
33
3.0
30
76
20
91
28
39
26
6
1.81
83901--83940
21
1.9
21
89
0
62
45
32
2
20
1.64
83913--83944
16
2.0
16
100
0
64
50
31
0
18
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84387--84411
12
2.1
12
100
0
50
32
16
20
32
1.94
89304--89343
18
2.2
18
86
0
53
55
17
2
25
1.55

Tables:   1

The End!