Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015097.1 Corchorus capsularis cultivar CVL-1 contig15118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30283

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2008--2114
32
3.3
32
88
0
142
16
11
33
38
1.85
2018--2068
16
3.2
16
72
10
59
17
7
35
39
1.79
2255--2293
20
2.0
20
85
10
53
35
5
5
53
1.45
2313--2390
16
4.9
16
75
6
68
5
10
33
51
1.58
2313--2388
32
2.4
32
75
0
80
5
10
34
50
1.59
2898--2948
26
2.0
25
85
7
68
54
15
1
27
1.52
7372--7668
155
1.9
154
79
9
327
34
19
15
29
1.93
8267--8310
13
2.9
16
77
19
58
43
0
0
56
0.99
9268--9406
31
4.5
31
83
0
152
17
23
25
34
1.96
11237--11270
18
2.0
16
88
11
50
58
0
2
38
1.13
14882--14912
16
2.0
15
93
6
53
29
6
0
64
1.18
14851--15000
76
2.0
77
95
1
275
36
9
4
50
1.56
16108--16136
2
14.5
2
100
0
58
0
48
0
51
1.00
17854--17880
2
13.5
2
100
0
54
48
0
0
51
1.00
18669--18695
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!