Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015098.1 Corchorus capsularis cultivar CVL-1 contig15119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12300

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
788--818
4
7.8
4
100
0
62
77
0
0
22
0.77
2200--3269
441
2.4
440
87
2
1474
42
18
13
25
1.87
7679--7711
2
16.5
2
100
0
66
51
0
0
48
1.00
8200--8270
35
2.0
35
100
0
142
36
16
14
32
1.89
9695--9729
2
17.5
2
93
0
61
51
0
2
45
1.16
11597--11668
21
3.4
21
80
14
85
23
22
5
48
1.71
11594--11682
21
4.3
20
80
7
79
21
20
6
51
1.70
11641--11719
35
2.2
37
86
6
117
18
20
7
53
1.69
11677--12036
22
16.5
22
69
17
164
19
19
5
55
1.63
11737--11793
15
3.9
15
68
13
55
15
24
5
54
1.62
11772--11922
21
7.2
21
73
16
125
17
16
6
59
1.57
11770--11923
63
2.4
64
79
13
167
16
16
6
60
1.55
11774--12005
42
5.4
43
75
14
153
19
18
6
56
1.62
11774--12005
87
2.7
84
76
9
220
19
18
6
56
1.62

Tables:   1

The End!