Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015099.1 Corchorus capsularis cultivar CVL-1 contig15120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9403

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
551--677
52
2.4
52
84
0
182
33
18
14
34
1.90
5191--5227
10
3.6
10
85
7
56
59
0
18
21
1.38
5293--5329
13
2.8
13
91
4
56
45
5
5
43
1.49
5991--6034
19
2.4
18
85
7
61
79
0
11
9
0.93
6015--6048
15
2.3
15
94
0
59
79
0
8
11
0.94
6010--6052
22
2.0
21
90
4
68
76
0
9
13
1.01
5995--6052
7
8.3
7
81
14
66
75
0
12
12
1.04
6998--7028
16
1.9
16
93
0
53
25
29
3
41
1.71
7049--7103
24
2.3
25
81
6
69
30
27
1
40
1.67
7048--7188
8
18.4
8
64
16
57
26
24
2
45
1.67
7066--7196
45
2.9
45
81
4
147
27
25
2
45
1.66
7162--7304
58
2.5
58
86
6
193
21
21
12
44
1.85
7222--7255
18
2.0
18
88
11
54
29
20
5
44
1.75
7289--7670
22
17.2
22
69
16
148
27
21
5
45
1.74
7282--7432
64
2.3
65
81
8
175
27
18
6
47
1.74
7496--7529
14
2.4
14
90
0
50
32
23
2
41
1.69
7483--7559
36
2.1
36
87
0
109
32
24
2
40
1.69
7534--7590
8
7.6
8
77
18
61
28
15
7
49
1.71
7534--7596
14
4.4
14
71
28
60
28
15
6
49
1.69
7714--7797
22
3.9
21
76
9
71
33
21
4
40
1.74
7780--7827
14
3.4
14
85
5
62
27
22
4
45
1.70

Tables:   1

The End!