Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015100.1 Corchorus capsularis cultivar CVL-1 contig15121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25560

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
507--557
18
2.7
19
75
19
54
49
7
3
39
1.51
3825--3853
15
2.0
15
93
6
51
34
3
13
48
1.60
4149--4184
19
1.9
18
88
5
54
41
2
22
33
1.68
12456--12493
17
2.2
17
86
9
51
23
36
10
28
1.88
13652--13713
30
2.1
30
100
0
124
25
12
20
40
1.89
15579--15612
17
2.0
17
100
0
68
29
23
11
35
1.90
22843--22914
16
4.5
16
74
6
65
52
26
11
9
1.67
22824--22914
32
2.8
31
80
9
103
52
26
10
9
1.67
22888--22921
15
2.2
16
94
5
61
50
38
11
0
1.39
23299--23381
41
2.0
41
92
0
139
30
25
21
22
1.99
23475--23576
32
3.2
30
83
9
87
36
38
11
13
1.82
23490--23593
32
3.2
32
93
0
163
37
35
11
15
1.84
23487--23610
16
7.7
16
74
11
83
35
37
12
15
1.84
23600--23638
14
2.8
14
84
0
51
35
38
15
10
1.81

Tables:   1

The End!