Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015101.1 Corchorus capsularis cultivar CVL-1 contig15122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39705

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
383--411
2
14.5
2
100
0
58
51
0
0
48
1.00
1830--1864
15
2.3
15
100
0
70
68
0
31
0
0.90
3072--3103
2
16.0
2
100
0
64
50
0
0
50
1.00
4125--4158
10
3.1
11
91
8
52
0
0
8
91
0.43
6117--6187
35
2.0
35
97
0
133
28
15
14
42
1.86
21198--21232
3
11.7
3
87
0
52
71
0
28
0
0.86
24434--24568
67
2.0
67
100
0
270
36
13
20
29
1.91
32277--32324
23
2.1
23
100
0
96
39
0
8
52
1.32
35858--35934
32
2.4
32
91
4
120
14
9
36
40
1.77
35883--35934
16
3.2
16
72
20
54
13
9
36
40
1.77
36082--36145
16
4.0
16
83
0
83
4
12
32
50
1.61
37706--38091
156
2.5
156
75
10
367
30
15
18
34
1.93
38599--38636
20
1.9
20
100
0
76
31
26
13
28
1.93

Tables:   1

The End!