Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015105.1 Corchorus capsularis cultivar CVL-1 contig15126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4305
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33


Found at i:4002 original size:14 final size:15

Alignment explanation


    Indices: 3974--4006  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       3964 ATTTTTAGTT

                    *      
       3974 TAATTGTTTTCTTTA
          1 TAATTGTTATCTTTA

                           
       3989 TAATTGTTAT-TTTA
          1 TAATTGTTATCTTTA

                
       4003 TAAT
          1 TAAT

       4007 CCCCTGTTTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14    8  0.47
  15    9  0.53

ACGTcount: A:0.27, C:0.03, G:0.06, T:0.64


Consensus pattern (15 bp):   
TAATTGTTATCTTTA
Done.