Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015106.1 Corchorus capsularis cultivar CVL-1 contig15127, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8361
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:7037 original size:6 final size:6

Alignment explanation


    Indices: 7026--7052  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       7016 TATAATCTGC

                                           
       7026 TTTAGA TTTAGA TTTAGA TTTAGA TTT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTT

       7053 GCTTTGCTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56


Consensus pattern (6 bp):   
TTTAGA

Found at i:7673 original size:30 final size:30

Alignment explanation


    Indices: 7637--7699  Score: 92
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       7627 TCTTCAAGGG

                     * *                   
       7637 GGAGGGAATTATGCGCCCAAGG-CTTATCAT
          1 GGAGGGAATGAAGCG-CCAAGGACTTATCAT

                                          
       7667 GGAGGGAATGAAGCGCCAAGGACTTATCAT
          1 GGAGGGAATGAAGCGCCAAGGACTTATCAT

               
       7697 GGA
          1 GGA

       7700 CTTGAAGATG


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  29    6  0.20
  30   24  0.80

ACGTcount: A:0.30, C:0.17, G:0.33, T:0.19


Consensus pattern (30 bp):   
GGAGGGAATGAAGCGCCAAGGACTTATCAT
Done.