Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015107.1 Corchorus capsularis cultivar CVL-1 contig15128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2025
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33


Found at i:1856 original size:30 final size:30

Alignment explanation


    Indices: 1820--1882  Score: 92
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1810 TCTTCAAGGG

                     * *                   
       1820 GGAGGGAATTATGCGCCCAAGG-CTTATCAT
          1 GGAGGGAATGAAGCG-CCAAGGACTTATCAT

                                          
       1850 GGAGGGAATGAAGCGCCAAGGACTTATCAT
          1 GGAGGGAATGAAGCGCCAAGGACTTATCAT

               
       1880 GGA
          1 GGA

       1883 CTTGAAGATG


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  29    6  0.20
  30   24  0.80

ACGTcount: A:0.30, C:0.17, G:0.33, T:0.19


Consensus pattern (30 bp):   
GGAGGGAATGAAGCGCCAAGGACTTATCAT
Done.