Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015109.1 Corchorus capsularis cultivar CVL-1 contig15130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65263

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20070--20455
156
2.5
157
77
9
394
30
15
18
34
1.92
20962--21000
20
2.0
20
94
0
69
33
30
12
23
1.92
24294--24551
51
5.1
51
86
0
381
39
15
21
22
1.92
30309--30479
81
2.1
81
94
0
297
21
23
16
38
1.93
32018--32065
24
2.0
24
100
0
96
29
16
20
33
1.95
32404--32452
17
3.1
17
65
17
50
34
12
18
34
1.88
33274--33313
3
13.3
3
94
0
71
2
0
65
32
1.06
39804--39837
2
17.0
2
100
0
68
50
0
0
50
1.00
41210--41252
21
2.0
21
95
0
77
25
25
20
27
1.99
41248--41286
19
2.1
19
90
4
62
12
10
20
56
1.65
41255--41317
28
2.2
28
97
2
117
12
6
17
63
1.49
41373--41407
14
2.5
14
85
0
52
71
5
20
2
1.19
41619--41725
53
2.0
53
94
0
187
44
26
6
22
1.77
43225--43250
2
13.0
2
100
0
52
50
0
0
50
1.00
44055--44132
39
2.0
39
92
0
129
38
14
12
34
1.84
44511--44550
21
2.0
20
85
9
55
12
10
20
57
1.63
49807--49835
15
1.9
15
100
0
58
20
6
41
31
1.79
49803--49841
15
2.5
15
79
4
51
23
12
38
25
1.90
52404--52539
34
3.9
34
79
8
105
17
26
4
51
1.64
52428--52798
34
11.2
33
70
19
133
16
25
3
54
1.59
52526--52770
7
36.6
7
68
19
121
16
25
2
55
1.55
52527--52551
12
2.1
12
100
0
50
16
32
0
52
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52495--52766
46
6.0
46
79
12
303
15
26
3
54
1.56
52534--52632
53
1.9
51
89
4
144
16
27
3
53
1.57
52696--52732
19
1.9
19
88
0
56
13
27
2
56
1.50
52459--52840
127
3.0
127
89
5
563
15
26
3
54
1.58
52686--52766
20
3.8
20
71
17
63
14
24
2
58
1.49
52581--52947
81
4.4
82
77
14
288
16
23
4
55
1.59
52706--52768
27
2.3
26
76
7
63
12
25
1
60
1.42
52774--52816
19
2.3
19
87
0
59
13
25
6
53
1.65
52775--52899
59
2.1
58
82
7
146
16
23
7
53
1.67
52892--53139
22
11.4
22
72
13
147
19
20
4
56
1.58
53022--53059
20
1.9
20
89
10
60
21
15
5
57
1.57
56390--56431
21
2.0
21
86
9
59
33
35
23
7
1.82

Tables:   1

The End!