Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015113.1 Corchorus capsularis cultivar CVL-1 contig15134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4666
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29


Found at i:4327 original size:12 final size:12

Alignment explanation


    Indices: 4305--4334  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       4295 ATTACAATTT

                        
       4305 GATTG-TTGATG
          1 GATTGATTGATG

                        
       4316 GATTGATTGATG
          1 GATTGATTGATG

                   
       4328 GATTGAT
          1 GATTGAT

       4335 CTTTTATTCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    5  0.28
  12   13  0.72

ACGTcount: A:0.23, C:0.00, G:0.33, T:0.43


Consensus pattern (12 bp):   
GATTGATTGATG
Done.