Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015119.1 Corchorus capsularis cultivar CVL-1 contig15140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40465

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3550--3622
32
2.3
32
80
4
85
28
28
24
17
1.98
4293--4329
11
3.0
13
84
15
60
0
40
0
59
0.97
4746--4790
23
2.0
23
95
0
81
8
6
13
71
1.31
6040--6159
27
4.4
27
93
1
195
20
40
17
21
1.92
9950--9976
12
2.2
12
100
0
54
14
14
51
18
1.76
10359--10421
32
2.0
32
90
0
99
36
22
19
22
1.95
10469--10607
24
5.8
24
90
1
172
25
28
33
12
1.92
10742--10787
24
1.9
24
86
0
65
21
26
23
28
1.99
10889--10944
21
2.5
22
94
5
96
46
21
14
17
1.84
11447--11497
20
2.6
21
77
22
65
33
35
17
13
1.89
13347--13373
6
4.5
6
100
0
54
18
0
29
51
1.46
20538--20576
17
2.3
16
83
12
51
84
0
7
7
0.77
20531--20576
18
2.6
18
82
3
58
80
0
10
8
0.91
27342--27389
24
2.0
24
95
0
87
25
18
25
31
1.98
34307--34340
14
2.4
14
95
0
59
32
11
26
29
1.92
36877--36926
17
2.9
17
90
3
73
18
6
46
30
1.73

Tables:   1

The End!