Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015121.1 Corchorus capsularis cultivar CVL-1 contig15142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 31916
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:25272 original size:20 final size:20

Alignment explanation


    Indices: 25247--25287  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      25237 TCACATCATT

                                
      25247 CTAGCCGTTGGAGCCTTTTC
          1 CTAGCCGTTGGAGCCTTTTC

                                
      25267 CTAGCCGTTGGAGCCTTTTC
          1 CTAGCCGTTGGAGCCTTTTC

             
      25287 C
          1 C

      25288 ACTTTTTCAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.10, C:0.32, G:0.24, T:0.34


Consensus pattern (20 bp):   
CTAGCCGTTGGAGCCTTTTC
Done.