Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015124.1 Corchorus capsularis cultivar CVL-1 contig15145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10272

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3575--3604
8
3.8
8
90
0
51
33
26
0
40
1.57
3624--3839
8
26.2
8
65
17
61
27
22
2
47
1.65
3649--3754
37
2.9
37
78
2
97
26
26
1
45
1.64
3770--3844
24
3.1
25
81
9
84
24
18
4
53
1.62
3825--3955
58
2.3
59
80
7
144
22
23
11
42
1.86
3962--4176
14
16.0
14
65
23
97
29
22
5
42
1.76
3934--4055
22
5.5
21
73
19
81
30
23
4
40
1.76
3949--4086
66
2.1
66
90
2
208
28
23
5
42
1.76
3977--4091
22
5.2
22
73
17
96
28
23
5
42
1.75
3963--4119
36
4.6
36
76
11
168
29
22
5
42
1.77
3963--4205
66
3.9
65
76
11
211
29
22
6
41
1.78
4077--4272
22
9.0
22
76
10
145
30
21
7
41
1.80
4239--4292
22
2.6
20
88
5
72
27
24
3
44
1.70
4946--4980
15
2.4
15
95
4
63
82
0
0
17
0.66
8338--8369
7
4.6
7
92
0
55
68
12
0
18
1.20

Tables:   1

The End!