Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015129.1 Corchorus capsularis cultivar CVL-1 contig15150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48958

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1623--1658
2
17.0
2
88
11
54
47
0
5
47
1.25
1621--1682
24
2.5
24
85
10
81
50
1
8
40
1.42
2703--2736
2
17.0
2
93
0
59
50
2
0
47
1.16
4718--4975
107
2.5
103
89
2
381
40
8
8
41
1.67
7179--7213
3
11.7
3
100
0
70
68
0
0
31
0.90
12485--12519
15
2.2
17
90
10
56
28
22
0
48
1.51
16911--16983
29
2.5
29
88
2
110
20
32
15
31
1.93
17164--17234
29
2.5
28
84
9
90
38
16
26
18
1.92
18400--18461
31
2.0
31
93
0
106
46
1
17
33
1.58
18525--18591
29
2.2
29
84
5
89
29
26
11
31
1.92
21023--21056
14
2.5
13
86
9
50
5
14
2
76
1.09
22725--22763
12
3.3
12
85
7
53
33
0
41
25
1.56
26580--26634
7
8.0
7
93
6
87
41
43
0
14
1.45
28506--28536
14
2.2
14
100
0
62
29
12
6
51
1.65
38530--38555
6
4.3
6
100
0
52
84
0
0
15
0.62
39954--39991
11
3.5
11
85
10
51
57
2
0
39
1.12

Tables:   1

The End!