genome.fa.s15132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015132.1 Corchorus capsularis cultivar CVL-1 contig15153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83072

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1388--5300	651	5.9	646	77	9	3287	36	15	14	33	1.88
1--5320	993	5.4	985	88	3	7862	36	15	14	33	1.88
6155--6207	24	2.2	24	100	0	106	24	11	22	41	1.86
18251--18409	58	2.8	57	88	4	214	27	20	17	34	1.95
18251--18415	57	2.9	58	86	4	226	27	20	17	34	1.95
21673--21716	9	4.8	9	88	2	61	88	2	9	0	0.59
21673--21718	20	2.3	20	89	10	69	89	2	8	0	0.57
29292--33095	332	11.5	330	75	9	2630	33	13	15	37	1.87
39924--39974	25	2.0	25	85	11	68	52	1	7	37	1.42
41733--41769	19	1.9	19	94	0	65	29	0	13	56	1.37
44955--45198	107	2.3	106	92	2	404	41	9	9	40	1.69
48690--48805	56	2.0	57	91	3	189	35	18	12	33	1.88
53756--53787	15	2.1	15	100	0	64	34	46	18	0	1.49
55769--55800	12	2.7	12	90	0	55	9	53	6	31	1.58
62254--62302	25	2.0	25	84	4	64	36	0	28	34	1.58
63479--63559	29	2.7	29	86	3	99	25	24	9	39	1.86
64252--64308	28	2.0	28	86	0	78	45	15	15	22	1.84
64616--64659	22	2.0	22	100	0	88	36	27	18	18	1.94
64616--64668	22	2.6	20	88	8	63	35	26	18	18	1.95
64640--64748	31	3.5	31	81	5	121	33	27	22	16	1.96
68994--69062	21	3.4	21	70	11	63	11	52	10	26	1.69
69299--69356	2	30.5	2	83	10	77	46	0	1	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76251--76290	19	2.2	18	86	13	55	60	17	7	15	1.57
79284--79314	12	2.6	12	89	0	53	83	0	0	16	0.64

Tables:   1

The End!