Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015133.1 Corchorus capsularis cultivar CVL-1 contig15154, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13781
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:144 original size:11 final size:11

Alignment explanation


    Indices: 128--152  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        118 TATTACATTT

                       
        128 AAAAAGATTCC
          1 AAAAAGATTCC

                       
        139 AAAAAGATTCC
          1 AAAAAGATTCC

               
        150 AAA
          1 AAA

        153 TACTTTAGCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16


Consensus pattern (11 bp):   
AAAAAGATTCC

Found at i:5523 original size:57 final size:58

Alignment explanation


    Indices: 5454--5568  Score: 171
    Period size: 57  Copynumber: 2.0  Consensus size: 58

       5444 ATTGCTTTTG

                             *                   *                     
       5454 CTAATCTTATTCACCTTTTATATGCATTTGGGAA-TTTGA-TGTCATCCCTAACTTCTA
          1 CTAATCTTATTCACCTTCTATATGCATTT-GGAAGTTGGAGTGTCATCCCTAACTTCTA

                         *                                            
       5511 CTAATCTTATTCAGCTTCTATATGCATTTGGAAGTTGGATGTGTCATCCCTAACTTCT
          1 CTAATCTTATTCACCTTCTATATGCATTTGGAAGTTGGA-GTGTCATCCCTAACTTCT

       5569 TAGAGGACCA


Statistics
Matches: 52,  Mismatches: 3, Indels: 4
        0.88            0.05        0.07

Matches are distributed among these distances:
  56    4  0.08
  57   31  0.60
  59   17  0.33

ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43


Consensus pattern (58 bp):   
CTAATCTTATTCACCTTCTATATGCATTTGGAAGTTGGAGTGTCATCCCTAACTTCTA
Done.