genome.fa.s15138.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015138.1 Corchorus capsularis cultivar CVL-1 contig15159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97596

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4464--4617	22	6.9	23	77	12	99	34	10	17	37	1.84
4744--4798	22	2.5	22	79	5	67	41	3	18	36	1.68
4857--4917	21	2.7	21	85	10	68	45	6	11	36	1.66
5036--5091	28	2.0	29	92	3	96	46	17	14	21	1.84
6883--6968	43	2.0	43	100	0	172	34	13	11	39	1.82
8416--8444	12	2.3	13	94	5	51	41	10	13	34	1.79
15236--15320	31	2.7	31	75	0	89	40	20	15	24	1.91
16555--16602	21	2.3	21	89	3	80	60	8	2	29	1.37
16633--16763	65	2.0	65	96	0	244	22	28	14	35	1.93
18899--21158	337	6.9	332	76	10	1790	33	13	16	36	1.88
22260--22315	29	1.9	29	92	0	94	32	8	0	58	1.29
23414--23587	84	2.1	84	87	8	248	37	8	1	52	1.43
26858--26923	31	2.1	31	88	5	98	31	18	3	46	1.64
27125--27162	19	2.0	20	85	15	53	28	5	2	63	1.30
27323--27466	22	6.5	22	75	10	123	32	8	20	38	1.82
27325--27466	68	2.1	66	80	5	160	32	8	20	38	1.83
27328--28340	44	23.3	44	66	13	219	37	9	16	35	1.82
27700--27759	21	2.6	24	87	10	81	43	8	13	35	1.74
27502--28431	22	42.7	22	67	15	187	39	10	15	35	1.81
30576--30607	10	3.1	11	82	17	50	65	0	15	18	1.27
32568--32621	27	2.0	27	100	0	108	29	14	3	51	1.60
32576--32624	14	3.6	14	72	5	55	28	14	4	53	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32575--32632	27	2.1	27	87	6	82	32	12	3	51	1.56
35617--35648	4	8.0	4	100	0	64	50	25	0	25	1.50
35986--36090	34	3.1	34	88	0	147	25	25	18	30	1.98
40498--40547	24	2.1	24	100	0	100	38	8	38	16	1.78
41420--41636	31	7.0	31	73	17	155	16	23	26	34	1.95
41512--41588	38	2.1	36	90	4	118	16	23	27	32	1.96
47895--47966	29	2.4	29	80	13	76	29	8	26	36	1.86
48581--48708	22	5.8	22	74	6	80	43	14	7	33	1.75
48723--48797	22	3.5	22	71	14	59	42	9	12	36	1.74
48760--48796	19	1.9	19	94	0	65	43	10	10	35	1.75
49654--49715	30	2.1	30	96	0	115	62	19	3	14	1.44
50141--50201	29	2.1	31	82	14	76	59	11	6	22	1.55
49966--50254	149	1.9	149	96	0	533	43	14	13	28	1.83
51736--51787	27	2.0	26	88	3	77	5	30	0	63	1.18
51978--52022	2	22.5	2	100	0	90	51	0	0	48	1.00
55602--55678	31	2.4	32	86	2	102	37	27	18	16	1.92
55729--55797	31	2.3	29	85	9	86	44	11	21	21	1.84
58212--58287	29	2.6	29	89	2	107	19	23	15	40	1.90
58391--58467	29	2.7	29	74	8	77	42	15	22	19	1.88
73305--73329	11	2.3	11	100	0	50	8	0	20	72	1.10
75242--75277	2	17.5	2	94	5	63	47	0	2	50	1.15
76279--76316	4	9.8	4	94	5	69	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77944--77973	14	2.1	14	100	0	60	43	0	13	43	1.43
96236--96335	45	2.2	45	87	0	137	25	33	19	23	1.97

Tables:   1

The End!