genome.fa.s15139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015139.1 Corchorus capsularis cultivar CVL-1 contig15160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69642

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337--363	13	2.1	13	100	0	54	55	0	0	44	0.99
761--806	19	2.6	17	81	15	58	45	0	0	54	0.99
761--808	18	2.8	16	80	17	60	47	0	0	52	1.00
919--996	30	2.5	31	81	6	88	24	21	19	34	1.96
3396--3423	13	2.2	13	100	0	56	71	0	14	14	1.15
14638--14677	18	2.2	18	86	0	53	15	40	15	30	1.87
18955--18992	14	2.8	14	84	4	51	78	18	2	0	0.86
23199--23306	34	3.1	34	83	7	135	30	5	27	36	1.80
24847--24898	4	13.5	4	92	8	90	76	0	23	0	0.78
29019--29055	2	18.5	2	89	10	58	51	0	2	45	1.15
41096--41127	14	2.3	14	100	0	64	50	15	0	34	1.45
44713--44748	2	18.0	2	100	0	72	50	50	0	0	1.00
49155--49416	113	2.4	110	90	7	408	38	11	1	48	1.48
50844--50900	28	2.0	28	100	0	114	49	14	7	29	1.69
51603--51745	72	2.0	72	87	2	207	37	16	14	31	1.89
59238--59443	86	2.5	83	82	10	237	37	7	2	51	1.46
59468--60772	329	3.9	329	78	6	1210	34	15	16	34	1.90
61012--62264	333	3.7	326	78	8	1211	33	14	16	35	1.89
62424--63577	331	3.5	327	79	7	1194	34	14	16	34	1.89
65376--66564	332	3.6	324	78	7	1233	34	14	16	34	1.89
67359--67399	20	2.0	20	100	0	82	65	4	9	19	1.40
68408--68438	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69320--69360	20	2.0	20	100	0	82	65	4	9	19	1.40

Tables:   1

The End!