Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015141.1 Corchorus capsularis cultivar CVL-1 contig15162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41151

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--27
2
13.5
2
100
0
54
48
0
0
51
1.00
152--959
328
2.4
329
82
6
936
32
15
15
36
1.89
2655--3986
330
4.0
328
78
9
1251
31
14
16
36
1.90
2655--3984
668
2.0
655
82
6
1601
31
14
16
36
1.90
4222--4247
11
2.4
11
100
0
52
26
19
26
26
1.99
4458--4493
2
18.5
2
94
5
65
50
0
0
50
1.00
14295--14328
7
4.9
7
85
0
50
17
17
11
52
1.73
22376--22432
27
2.1
27
81
12
64
19
5
3
71
1.19
35869--36047
90
2.0
90
86
0
250
34
18
24
22
1.97
37496--37572
23
3.2
23
69
16
75
29
5
10
54
1.56
37486--37585
49
2.0
49
100
0
200
32
6
10
52
1.59

Tables:   1

The End!