Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015144.1 Corchorus capsularis cultivar CVL-1 contig15165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100876

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7535--7815
96
2.9
96
99
0
555
45
22
17
14
1.85
8076--8116
19
2.2
19
95
0
73
26
17
4
51
1.65
9932--9976
17
2.6
17
78
0
54
46
2
6
44
1.42
11761--11818
27
2.1
27
96
0
107
10
22
8
58
1.58
11761--11804
14
3.2
14
74
6
54
11
18
9
61
1.55
13131--13165
9
3.9
9
88
0
52
8
48
25
17
1.75
17258--17335
39
2.0
39
92
0
129
30
30
14
24
1.94
18575--18599
2
12.5
2
100
0
50
0
0
48
52
1.00
23216--23259
15
2.9
15
96
0
79
34
27
4
34
1.77
27917--27949
15
2.1
16
88
5
50
3
57
3
36
1.29
28399--28423
5
5.0
5
100
0
50
0
20
0
80
0.72
35621--35693
29
2.5
29
79
2
83
46
15
16
21
1.83
36275--36369
31
3.1
31
78
0
109
18
18
24
37
1.94
43119--43149
2
15.5
2
100
0
62
48
0
0
51
1.00
52695--52798
29
3.6
29
82
5
120
31
26
8
32
1.87
59787--59830
23
1.9
23
85
0
61
50
4
6
38
1.50
72375--72564
54
3.3
57
85
8
253
43
13
29
13
1.82
72583--72687
42
2.5
42
86
9
151
51
8
28
11
1.67
78574--78610
18
2.1
18
89
0
56
29
37
5
27
1.79
89914--89938
2
12.5
2
100
0
50
48
0
0
52
1.00
95712--95747
7
5.1
7
93
0
63
83
0
16
0
0.65
95712--95752
14
3.1
13
86
13
57
82
0
17
0
0.66

Tables:   1

The End!