Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015146.1 Corchorus capsularis cultivar CVL-1 contig15167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7512
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Found at i:690 original size:324 final size:322
Alignment explanation
Indices: 17--4573 Score: 4506
Period size: 324 Copynumber: 14.1 Consensus size: 322
7 TTTTTTCTTT
* *
17 CTTCTAATATTGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCAAAACAAGATTGAGA
1 CTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGA
* * * * *
82 TGCTCGAAAAAACAAATCCTTATATCTAATATGCCTGAGATTTAGTTCGATGAGTATAGATTTTT
66 TGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * * * ** * ** * *
147 CAAGGAATCTTTCTGCAAAAAATCATTCAAAACCGTGCTAGGACTCCCGAAAAACGTTTTTACCC
131 CAAGGAGTCTTTGTGCCAAAAATCA-TGAAAATTGAGCCGGGGCT-CCGAAACACGTTTTTACCC
** * * * * *
212 TGAAACCGTAATGGTTGGTATACGATTTCGGCTAAAAACTGACACGAAAAGTTTTTTCTCAAATT
194 AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTT
* *
277 TTTGCCACAATAAT-CAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGAGCTTTTCACA-
259 TTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCA-AG
* * * * * * *
340 CTTCTAAAATAGTTTTTTTATTTTTCCTCCTAATTAATTTCTAATTAAATCGAAACAAGATTCAA
1 CTTCTAATATCGTTTTTTCATTTTT-TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAG
* * *
405 ATGCTC-ATAAAAACAAATCCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATAT
65 ATGCTCGA-AAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
* * * * * * ** *
469 TTGAAGGGGTCTTTGTGCCCAAGATCATCGAAAATTGACCCGGGGCTCCGGAATGCGTTTTTAGC
129 TTCAAGGAGTCTTTGTGCCAAAAATCAT-GAAAATTGAGCCGGGGCTCCGAAACACGTTTTTACC
* * * * * *
534 CAAAAACTGTGATGGTTAGTATACGATTTCAGCAAAAAATTGACCCGAAAA-TTTATTCTCAATT
193 CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATT
* * * * * * * * *
598 TTTTGTCACAATA-TATAGAGACAATATATAATTAAACGCCAAAAACATTGATGGGATTTTCAAG
258 TTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAG
*
662 CTTCTAATATC-TTATATTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAG
1 CTTCTAATATCGTT-TTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAG
*
726 ATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTTGATGAATATAGATATT
65 ATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATT
* * * * * * * * *
791 TCAAGGAGTCCTTATGACAAAAATCTTACAAAAGTGAGGCAGGGCTCTAGAAACACGTTTTTACC
130 TCAAGGAGTCTTTGTGCCAAAAATCAT-GAAAATTGAGCCGGGGCTC-CGAAACACGTTTTTA-C
* * * * *
856 CCAAAAACCGTGATAGTTCGTACACGATTTCGGTTAAAAACTGACCCTAAAAGTTATTTCTCAAT
192 CCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAAT
* * * * *
921 TTTTTGCCATAATACTA-AAAAAAAAAATATAATTCAATGCCAAAAAGATTGACAGGCTTCTCAA
257 TTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAA
985 G
322 G
* * *
986 CTTCTAATATCATTTTTTTTTCATTTTTTACCAAATTAATTTCT-ATATAAATCGAAACAAGATT
1 CTTCTAATATC---GTTTTTTCATTTTTTTCCGAATTAATTTCTAAT-TAAATCGAAACAAGATT
* * * *
1050 GAAATGCTCGAAGAAACAAATCCTTATATCAAATATGGCTGAGATTTGGTTCAATGAATATAGAT
62 GAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGAT
* ** * * * * *
1115 ATTTTAAGGAGTCTTTCAGCTAAAAATCTTTCAAAACT-ATGTCGGGGCTCCCGAAACACGTTTT
127 ATTTCAAGGAGTCTTTGTGCCAAAAATC-ATGAAAATTGA-GCCGGGGCT-CCGAAACACGTTTT
*
1179 TACCCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAAACTGACCCGAAATATGTTTTTT
189 TA-CCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAA-A-G-TTTTT
* ** * * ** *
1244 TCTAAATTTTTTGCCACAATACT-CAGAAAAAATATATAATTTGACGCTAAAAAGACGGACGTGC
250 TCTCAATTTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGC
1308 TTTTC-AG
315 TTTTCAAG
* * * *
1315 ACTTCTAATATCGTTTTTTCATTATTTTTCCAAATTAATTTCAAATTAAATCGAGACAAGAATGA
1 -CTTCTAATATCGTTTTTTCATT-TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGA
* * *
1380 GATGCTCGAAGAAAGAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATAAATATAGATAT
64 GATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
* * * * * * * *
1445 TTTAATGAGTCATTCTGCCAAAAATCATGCAAAATTGAGCCGGAGATCCTGAAAACACATTTTCA
129 TTCAAGGAGTCTTTGTGCCAAAAATCATG-AAAATTGAGCCGGGGCTCC-G-AAACACGTTTTTA
* *
1510 CCCAAAAAACCGTGATGTTTAATGGTTAGTACACAATTTCGGTTAAAAACTGACCCGAAAAG-TT
191 CCC-AAAAACC--G-TG----ATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTT
*
1574 TTTCTCAATTTTTTGCTACAATACT-CAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGA
248 TTTCTCAATTTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACG-
** ***
1638 GTTTTTTCTTT
312 GGCTTTTCAAG
* * *
1649 CTTCTAATATCGTTTTTTCATTTTTTCCCGAATTAATTTCTAGTTAAATCAAAACAAGATTGAGA
1 CTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGA
* * *
1714 TGCTCGAAAAAACAAATCCTTATATCTAATATGGCTGAGATTTGGTTCGATGAGTATAGATTTTT
66 TGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * * * * ** * * * *
1779 CAAGGAATCTTTCTGCAAAAAAACATTCAAAACCGTGCCAGGACTCCCGAAAAACGTTTTTACCC
131 CAAGGAGTCTTTGTGCCAAAAATCA-TGAAAATTGAGCCGGGGCT-CCGAAACACGTTTTTACCC
* * * * * *
1844 TAAAACTGTAATGGTTAGTATAAGATTTCGGCTAAAAACTGACACGAAAAGTTTTTTCTCAATTT
194 AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTT
* * * * * *
1909 TTTGCCACAATACTA-AGAAAAAATATATAATTTAACGCCAAAAATATT-ATTGTGTTTTTCAAG
259 TTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGA-CGGGCTTTTCAAG
* * *
1972 CTTCTAATATTGTTTTTTCAATTTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTT
1 CTTCTAATATCGTTTTTTC-A--TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTG
* * ** * * *
2037 AGATGCTC-AGAAAAACAAATCCTTATATCCAATGTGGCCGCCATTTAGTTAGATAAATATAGAT
63 AGATGCTCGA-AAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGAT
* *** * *
2101 ATTCCAAGGAGTCTTTGTGCCAAAAATCATGAAAAGTTTTTCC-GGGATCCTG-AACGCGTTTTT
127 ATTTCAAGGAGTCTTTGTGCCAAAAATCATGAAAA-TTGAGCCGGGGCTCC-GAAACACGTTTTT
* * ** * * *
2164 AGCCAAAAACCGTGATGTTTAGTACACGATTTCGAATAAAAACTGACCCGAGAAGGTTTTTCTAA
190 ACCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCA
* * *
2229 ATTTTTTGCCACTAA-AAT-CAGAAAAAACATAT-ATTCAATGCCAAAAAGATTGACAGGCTTTT
255 ATTTTTTGCCAC-AATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTT
*
2291 CAAT
319 CAAG
* * *
2295 CTTCTAATATCGTTTTTTCATTTTTTTCCGAATCAATTTTTAATTAAATCGAAACAAGAATGAGA
1 CTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGA
* * * *
2360 TGCTCGAAGAAATAAATCCTTATATCCAATATGGCTGAGATTTGATTCGATGAATATAGAAATTT
66 TGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * **
2425 TAAGGAGTCATTT-TGCCAAAAATCATGCAAAACTGAGCCGGGATTCCCGAAACACGTTTTTACT
131 CAAGGAGTC-TTTGTGCCAAAAATCATG-AAAATTGAGCCGGGGCT-CCGAAACACGTTTTTAC-
* *
2489 CC---AA-C--------T--TACACGATTTTGG-TGAAAAACTGACCC-AAAAATTTTTTCTCAA
192 CCAAAAACCGTGATGGTTAGTACACGATTTCGGCT-AAAAACTGACCCGAAAAGTTTTTTCTCAA
* *
2538 TTTTTTTGCCACAATACT-CAGAAAAAATATATAATTGAATGCCAAAAAGATTGACTGGCTTTTC
256 -TTTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTC
2602 AAG
320 AAG
* * * *
2605 CTTCTAATATAGTTTTTTCATTTTTTTCTCCTAACTAATTTCTAATTAAATCGAAACAAGATTCA
1 CTTCTAATATCGTTTTTTCA-TTTTTT-TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGA
* * * * *
2670 AATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATAT
64 GATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
* * * ** *
2735 TTCAAGGGGTCTTTGTGCCCAAAATCATGCAAAATTGAGCCGGGGCTCCGGAATGCGTTTTTAAC
129 TTCAAGGAGTCTTTGTGCCAAAAATCATG-AAAATTGAGCCGGGGCTCCGAAACACGTTTTTACC
* * * * * *
2800 CAAAAACTGTGATGGTTAGTATACGATTTTGGCAAAAAATTGACCCGGAAA-TTTTATTCTCAAT
193 CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTT-TTCTCAAT
* * * * * * *
2864 TTTTTGTCACGATA-TAAAGAGAAAATATATAATTAAATGCCAAAAATATTGACGGGATTTTCAA
257 TTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAA
2928 G
322 G
*
2929 CTTCTAATATC-TTTTATTCA-TTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAG
1 CTTCTAATATCGTTTT-TTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAG
* * * *
2992 ATGCTTGAAAAAAAGAAATCCTTATATCCAATATGGCTGAGATTTGATTCCATGAATATAGATAT
65 ATGCTCG-AAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
* * * ** * * * * * * * *
3057 TTTAAGAAGTCCTTACGACAAAAATCTTACAAAAGTCAGTCAGGGCTCCAGTAACACGTTTTTAC
129 TTCAAGGAGTCTTTGTGCCAAAAATCAT-GAAAATTGAGCCGGGGCTCC-GAAACACGTTTTTAC
* * *
3122 CCTAAAACC------G-TA-T----GATTTCGGTTAAAAACTGACACGAAAAGTTTTTTCTCAAT
192 CCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAAT
* * * * *
3175 TTTTTGCCACAATACTA-AAAAAAAATATATAATTTAACGCCAAAAAGATTGTCGTGCTTTTCAA
257 TTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAA
3239 G
322 G
* * *
3240 CTTCTATTA-CTGTTTTTTCAATTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTT
1 CTTCTAATATC-GTTTTTTC-A-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTG
* * * * *
3304 AGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGACATTTGGTTAGATAAATATAGATA
63 AGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATA
* ** * *
3369 TCTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAAGTT-TTCC-AGGCTCCTG-AACGCGTTTTT
128 TTTCAAGGAGTCTTTGTGCCAAAAATCATG-AAAA-TTGAGCCGGGGCTCC-GAAACACGTTTTT
* *
3431 AGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAGAAAAATTTTTTCT
190 ACCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCC--GAAAAGTTTTTTCT
* * * *
3496 CAATTTTTTTTGCCACAATACT-CAGAAAAAA-ATATAA-TCTAATGCAAAAAAGATTTATGTGC
253 CAA--TTTTTTGCCACAATACTACAGAAAAAATATATAATTC-AATGCCAAAAAGATTGACGGGC
*
3558 TTTTAAAG
315 TTTTCAAG
* ** *
3566 CTTGTAATATCGATTTTTTTTTCATTTTTTGTTTAGAATTAATTTCTAATTAAATCGTAACAAGA
1 CTTCTAATATCG----TTTTTTCA-TTTTT-TTCCGAATTAATTTCTAATTAAATCGAAACAAGA
** * * * * * * ** * *
3631 TTCCGATGCTTGTAAAAACAAATCCTTGTGTTCAATGTGATTGACATTTGGTTCAATGAATATAG
60 TTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAG
* * *
3696 ATATTTCAAGGAGTCTTTGTGCCAAAAATAATGCAAAATTGAGTCGGGGCTCC-AGAACGCGTTT
125 ATATTTCAAGGAGTCTTTGTGCCAAAAATCATG-AAAATTGAGCCGGGGCTCCGA-AACACGTTT
* * *
3760 TTAGCCAAAAAACCGTGATGGTTAGTACACGATTTCGACTAAAAACTGACCCGAAAAGTTTTATC
188 TTA-CCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTC
* * * * * * **
3825 TGAATTTTTTGCCACAATACT-TAGAAAAAATATACAATTTAATGTCAAAAAGATTAACATGCTT
252 TCAATTTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTT
* *
3889 TTTAAA
317 TTCAAG
* * *
3895 CTTCTAATATCGTTTTTTCA-ATTTTTCCGAATTAATTTCTAATTAAATCGAAATAACATTCGTA
1 CTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT-G-A
* * * * * *
3959 -ATGCTCGTAAAAA-AAATCCTTATATACAATATGGTTGACATTTAGTTCAATGAATATAGATAT
64 GATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
* * ** * *
4022 TTCAAGGAGTATTTGTGCCAAAACTCATGCAAAATTGAGCCAAGGCTCCGGAACACGTTTTTTCC
129 TTCAAGGAGTCTTTGTGCCAAAAATCATG-AAAATTGAGCCGGGGCTCCGAAACACGTTTTTACC
** * *
4087 CTAAAAAATGTGATGGTTTGTACACCATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTCTCAA
193 C-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAG-TTTTTTCTCAA
* * * * **
4152 TTTTTT-CTACAATACT-CAGAAAAAATATATAATTCAATGACAAAAAGCTTGATGAGTTTTTTT
256 TTTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACG-G---GCTT
***
4215 TTCTTT
317 TTCAAG
* * *
4221 ATTCTAATATCGTTTTTTCATTTTTTTCCTAATTAATTTCTAATTAAATCGAAACAAGATTGAAA
1 CTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGA
* ** *
4286 TGCTCGAAAAAACAAATCCTTATATCTAATATGGCTGAGATTTGGTTCGATGCGTATAGATTTTT
66 TGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * * * * * * *
4351 CAAGGAGT-TTGTTTGCAAAAAATTATTTAAAACTGTGTCAGGGCTCCCGAAACACGTTTTTACC
131 CAAGGAGTCTT-TGTGCCAAAAATCA-TGAAAATTGAGCCGGGGCT-CCGAAACACGTTTTTACC
* * * * * *
4415 CTAATAACCGTAACGGTTAGTACACGATTTCTGCTAAAAACTGACACGAAAAGTTTTTTTCTAAA
193 C-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAG-TTTTTTCTCAA
* * * * * * *
4480 TTTTTTACCGCAATACT-TAGAAAAAATATATAATTTAATGACAAAAAGATTGTCGTGCTTTTCA
256 TTTTTTGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCA
4544 AG
321 AG
4546 CTTCTAATATCGTTTTTTCAATTTTTTT
1 CTTCTAATATCGTTTTTTC-ATTTTTTT
4574 TTTTCAATTT
Statistics
Matches: 3497, Mismatches: 590, Indels: 291
0.80 0.13 0.07
Matches are distributed among these distances:
308 15 0.00
309 49 0.01
310 53 0.02
311 134 0.04
312 142 0.04
313 76 0.02
314 47 0.01
315 1 0.00
316 2 0.00
317 2 0.00
318 2 0.00
319 2 0.00
320 118 0.03
321 186 0.05
322 408 0.12
323 301 0.09
324 433 0.12
325 73 0.02
326 203 0.06
327 347 0.10
328 241 0.07
329 113 0.03
330 220 0.06
331 32 0.01
332 229 0.07
333 30 0.01
334 1 0.00
335 1 0.00
336 36 0.01
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (322 bp):
CTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGA
TGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
CAAGGAGTCTTTGTGCCAAAAATCATGAAAATTGAGCCGGGGCTCCGAAACACGTTTTTACCCAA
AAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTT
TGCCACAATACTACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAG
Found at i:3052 original size:322 final size:321
Alignment explanation
Indices: 2495--4573 Score: 2045
Period size: 322 Copynumber: 6.4 Consensus size: 321
2485 TACTCCAACT
* * *
2495 TACACGATTTTGG-TGAAAAACTGACCCAAAAATTTTTTCTCAATTTTTTTGCCACAATACTCAG
1 TACACGATTTCGGCT-AAAAACTGACCCGAAAATTTTTTCTCAA-TTTTTTGCCACAATACTAAG
* * *
2559 AAAAAATATATAATTGAATGCCAAAAAGATTGACTGGCTTTTCAAGCTTCTAATATAGTTTTTTC
64 AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTC
* * * * *
2624 ATTTTTTTCTCCTAACTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAAT
129 A-TTTTTT-TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAAT
* * * *
2689 CCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGGGGTCTTTGTGCC
192 CCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCC
* * ** * *
2754 CAAAATCATGCAAAATTGAGCCGGGGCTCCGGAATGCGTTTTTAACCAAAAACTGTGATGGTTAG
257 AAAAATCATGCAAAATTGAGCCGGGGCTCCGAAACACGTTTTTACCCAAAAACCGTGATGGTTAG
* * * * * * *
2819 TATACGATTTTGGCAAAAAATTGACCCGGAAATTTTATTCTCAATTTTTTGTCACGATA-TAAAG
1 TACACGATTTCGGCTAAAAACTGACCCGAAAATTTT-TTCTCAATTTTTTGCCACAATACT-AAG
* * * *
2883 AGAAAATATATAATTAAATGCCAAAAATATTGACGGGATTTTCAAGCTTCTAATATC-TTTTATT
64 AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTT-TT
* * *
2947 CA-TTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTTGAAAAAAAGAAAT
128 CATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAAT
* * * * * ** *
3011 CCTTATATCCAATATGGCTGAGATTTGATTCCATGAATATAGATATTTTAAGAAGTCCTTACGAC
192 CCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCC
* * * * * * * *
3076 AAAAATCTTACAAAAGTCAGTCAGGGCTCCAGTAACACGTTTTTACCCTAAAACC------G-TA
257 AAAAATCATGCAAAATTGAGCCGGGGCTCC-GAAACACGTTTTTACCCAAAAACCGTGATGGTTA
3134 -
321 G
* * *
3134 T----GATTTCGGTTAAAAACTGACACGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTAAAA
1 TACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTCTCAATTTTTTGCCACAATACTAAGA
* * * * *
3195 AAAAATATATAATTTAACGCCAAAAAGATTGTCGTGCTTTTCAAGCTTCTATTA-CTGTTTTTTC
65 AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATC-GTTTTTTC
* * *
3259 AATTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAAT
129 -A-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAAT
* * * * *
3324 CCTTATATCCAATGTGGCTGACATTTGGTTAGATAAATATAGATATCTCAAGGAGTCTTTGTGCC
192 CCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCC
** * * *
3389 AAAAATCATGCAAAAGTT-TTCC-AGGCTCCTG-AACGCGTTTTTAGCCAAAAACCGTGATGGTT
257 AAAAATCATGCAAAA-TTGAGCCGGGGCTCC-GAAACACGTTTTTACCCAAAAACCGTGATGGTT
3451 AG
320 AG
3453 TACACGATTTCGGCTAAAAACTGACCCGAGAAAAATTTTTTCTCAATTTTTTTTGCCACAATACT
1 TACACGATTTCGGCTAAAAACTGACCC--G-AAAATTTTTTCTCAA--TTTTTTGCCACAATACT
* * * * * * *
3518 CAGAAAAAA-ATATAA-TCTAATGCAAAAAAGATTTATGTGCTTTTAAAGCTTGTAATATCGATT
61 AAGAAAAAATATATAATTC-AATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCG---
** * ** * *
3581 TTTTTTTCATTTTTTGTTTAGAATTAATTTCTAATTAAATCGTAACAAGATTCCGATGCTTGTAA
122 -TTTTTTCA-TTTTT-TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAA
* * * * ** * *
3646 AAACAAATCCTTGTGTTCAATGTGATTGACATTTGGTTCAATGAATATAGATATTTCAAGGAGTC
184 AAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTC
* * * *
3711 TTTGTGCCAAAAATAATGCAAAATTGAGTCGGGGCTCC-AGAACGCGTTTTTAGCCAAAAAACCG
249 TTTGTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGA-AACACGTTTTTA-CCCAAAAACCG
3775 TGATGGTTAG
312 TGATGGTTAG
* * * *
3785 TACACGATTTCGACTAAAAACTGACCCGAAAAGTTTTATCTGAATTTTTTGCCACAATACTTAGA
1 TACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTCTCAATTTTTTGCCACAATACTAAGA
* * * * ** * *
3850 AAAAATATACAATTTAATGTCAAAAAGATTAACATGCTTTTTAAACTTCTAATATCGTTTTTTCA
65 AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCA
* * * *
3915 -ATTTTTCCGAATTAATTTCTAATTAAATCGAAATAACATTCGTA-ATGCTCGTAAAAA-AAATC
130 TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT-G-AGATGCTCGAAAAAACAAATC
* * * * * *
3977 CTTATATACAATATGGTTGACATTTAGTTCAATGAATATAGATATTTCAAGGAGTATTTGTGCCA
193 CTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCA
* ** * * ** *
4042 AAACTCATGCAAAATTGAGCCAAGGCTCCGGAACACGTTTTTTCCCTAAAAAATGTGATGGTTTG
258 AAAATCATGCAAAATTGAGCCGGGGCTCCGAAACACGTTTTTACCC-AAAAACCGTGATGGTTAG
* * *
4107 TACACCATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTCTCAATTTTTT-CTACAATACTCAG
1 TACACGATTTCGGCTAAAAACTGACCCGAAAA--TTTTTTCTCAATTTTTTGCCACAATACTAAG
* * * ** ****
4171 AAAAAATATATAATTCAATGACAAAAAGCTTGATGAGTTTTTTTTTCTTTATTCTAATATCGTTT
64 AAAAAATATATAATTCAATGCCAAAAAGATTGACG-G---GCTTTTCAAGCTTCTAATATCGTTT
* *
4236 TTTCATTTTTTTCCTAATTAATTTCTAATTAAATCGAAACAAGATTGAAATGCTCGAAAAAACAA
125 TTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAA
* ** * *
4301 ATCCTTATATCTAATATGGCTGAGATTTGGTTCGATGCGTATAGATTTTTCAAGGAGT-TTGTTT
190 ATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTT-TGT
* * ** * * * * * * *
4365 GCAAAAAATTATTTAAAACTGTGTCAGGGCTCCCGAAACACGTTTTTACCCTAATAACCGTAACG
254 GCCAAAAATCATGCAAAATTGAGCCGGGGCT-CCGAAACACGTTTTTACCC-AAAAACCGTGATG
4430 GTTAG
317 GTTAG
* * * * * *
4435 TACACGATTTCTGCTAAAAACTGACACGAAAAGTTTTTTTCTAAATTTTTTACCGCAATACTTAG
1 TACACGATTTCGGCTAAAAACTGACCCGAAAA--TTTTTTCTCAATTTTTTGCCACAATACTAAG
* * * *
4500 AAAAAATATATAATTTAATGACAAAAAGATTGTCGTGCTTTTCAAGCTTCTAATATCGTTTTTTC
64 AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTC
4565 AATTTTTTT
129 -ATTTTTTT
4574 TTTTCAATTT
Statistics
Matches: 1451, Mismatches: 242, Indels: 122
0.80 0.13 0.07
Matches are distributed among these distances:
310 1 0.00
311 112 0.08
312 17 0.01
313 75 0.05
314 47 0.03
315 1 0.00
316 2 0.00
317 2 0.00
318 2 0.00
319 1 0.00
321 41 0.03
322 302 0.21
323 73 0.05
324 100 0.07
325 52 0.04
326 88 0.06
327 136 0.09
328 102 0.07
329 93 0.06
330 141 0.10
331 18 0.01
332 45 0.03
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.36
Consensus pattern (321 bp):
TACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTCAATTTTTTGCCACAATACTAAGAA
AAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCAT
TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTT
ATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAA
ATCATGCAAAATTGAGCCGGGGCTCCGAAACACGTTTTTACCCAAAAACCGTGATGGTTAG
Found at i:4577 original size:14 final size:14
Alignment explanation
Indices: 4558--4584 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4548 TCTAATATCG
4558 TTTTTTCAATTTTT
1 TTTTTTCAATTTTT
4572 TTTTTTCAATTTT
1 TTTTTTCAATTTT
4585 GCAGGGGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTCAATTTTT
Found at i:5263 original size:322 final size:322
Alignment explanation
Indices: 4588--7505 Score: 3203
Period size: 322 Copynumber: 9.1 Consensus size: 322
4578 CAATTTTGCA
* * *
4588 GGGGCTCCTGAACGCGTTTTTAGCCAAAAACCGTGATGATTAGTACACGATTTCGGCTAAAAACT
1 GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
* *
4653 GACACGAGAAA-TTTTTTCTC-ATTTTTTCTCCACAATACTCA-AAGAAAA-ATATAATTTAATG
66 GACCCGA-AAAGTTTTTTCTCAATTTTTT-GCCACAATACTCAGAA-AAAATATATAATTTAATG
** * *
4714 GAAAAAAGATTAATGTGCTTTTCAAGCTTGTAATATCGTTTATTTCATTTTTTT-CGAATTAATT
128 CCAAAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTT-TTTCATTTTTTTCCGAATTAATT
* * * * * * **
4778 TCTAATTAAATTGTAACAAGATTCCGATGCTCGTAAAAACAAATCCTTGTGTACAATGTGATTGA
192 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* * * * **
4843 CATTTTGTTCAATGAATATAGATATTTCAAGTAGTCTTTGTGTCAAAAAGAATGCAAAATTGAGC
257 CATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGC
4908 C
322 C
* * ** * ** * *
4909 GAGACTCTAGAACACGTTTTTAGCCAAAAACCGTCATGGTTAGTACAAAATTTCGACTAAAAGCT
1 GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
* * * * *
4974 GACCCGAAAAGTTTTATCTGAATTTTTTGCCACAATACTTAGAAAAAATATACAATTTAATGGCA
66 GACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATGCCA
* *
5039 AAAAGATTAACATGCTTTTCAATCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTA
131 AAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTA
* * *
5104 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-AAATCCTCATATCCAATATGGTTGACATT
196 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGACATT
* * * **
5168 TAGTTCGATGAATATAGATAATTCAAAGAGTAATTGTGCCAAAAATCATGCAAAATTGAGCC
261 TGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGCC
* * ** *
5230 AGGGCACCGGAACACGTTTTTTCCCCAAAAACCGTGATGGCTT-GTTCACGATTTCGGCTAAAAA
1 GGGGCTCCGGAACACG-TTTTTAGCCAAAAACCGTGATGG-TTAGTACACGATTTCGGCTAAAAA
* * * *
5294 CTGACCCGAAAAGTTTTTTCTCAATTTTTTGCTACAGTACTCAGAGAAAATATATAATTCAATGC
64 CTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATGC
* * * **** *
5359 CAAAAAGATTGACGAGTTTTTTTTTTCTTCTAATATCGTTTTTTTCATTTTTTTCTGAATTAATT
129 CAAAAAGATTAACGTG-CTTTTCAAGCTTCTAATATCG-TTTTTTCATTTTTTTCCGAATTAATT
* * * * ** *
5424 TCTAATTAAATCAAAAGAAGATTGAGATGCTCGAAAAAACAAATCCTTATATTTAATATGGCTGA
192 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* * * * * * * * * *
5489 GATGTGGTCCGATGAGTATAGAT-TTT-ACAGGTAGTCTTTCTGCAAAAAATTATTCAAAACTGT
257 CATTTGGTTCGATGAATATAGATATTTCA-AGG-AGTCTTTGTGCCAAAAATCATGCAAAATTGA
5552 GCC
320 GCC
* * * *
5555 AGGGCTCCCGAAACACGTTTTTACCCTAAAAACCGTGAT-G---GTACACGATCTCGGCTAAAAA
1 GGGGCT-CCGGAACACGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAA
* *
5616 CTGACTCGAAAAGTTTTTTTTCTCAA-TTTTTACCACAATACTCAG-AAAAATATATAATTT-A-
64 CTGACCCGAAAAG--TTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAAT
**
5677 GCACAAAAAAGATTGCCGTGCTTTTCAAGCTTCTAATATCGTTTTTTCAATTTTTTTTCCGAATT
127 GC-C-AAAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTTTTTC-A-TTTTTTTCCGAATT
* *
5742 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTCATATCCAATGTGG
188 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGG
* * * *
5807 CTGACATTTGGTTAGATAAATATAGATATTTCAAGGAGTCTTTGTGACAAAAAATCAGGCAAAAT
253 CTGACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CCAAAAATCATGCAAAAT
** *
5872 TTTGTC
317 TGAGCC
** * * * * * * *
5878 GGGGCTCCTAAACGCGTTTTTAGCCAAAAACCGTAATGGTTAATATATGATTTTCGACTAAAAAT
1 GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA-TTTCGGCTAAAAAC
* * *
5943 TGACCCGATAAGTTTTTTTCTCAATTTTTTGCCACAATACTTAGAAAAAATATATAATTTAACGC
65 TGACCCGAAAAG-TTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATGC
* * * * *
6008 CAAAAAGATTAACGTCCTTTTTAAACTTGTAATATCGTTTTTT-ATTTTTTTTCCGAATTATTTT
129 CAAAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCA-TTTTTTTCCGAATTAATTT
* * *
6072 CAAATTAAATCGTAACAAGATTCAGATGCTCGTAAAAACAAATCTTTATATCCAATGTGGCTGAC
193 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAC
* * * * **
6137 CTTTGGTTAGATAAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCAGGCAAAATTTTGCC
258 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGCC
* * * * *
6202 GGGGCTCCTGAACGCGTTTTTAGCAAAAAACTGTGATGGTTAGTATACGAATTT-GGCTAAAAAC
1 GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG-ATTTCGGCTAAAAAC
** * *
6266 TGACCCGAGGAGTTTTTTTTTCAACTTTTTT-CCACAATACTCAG-AAAAATATATAATTTAACG
65 TGACCCGAAAAG-TTTTTTCTCAA-TTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATG
* * * *
6329 CCAAAAAGATTAACGTGCTTTTTAAGCTTGTAATATCGTTATTT--TTTTTTTCCGAATTATTTT
128 CCAAAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTT
*
6392 CAAATTAAATC-ATAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
193 CTAATTAAATCGA-AACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* * * * * * * *
6456 AATTTGGTTTGATGAATATAGATATTTCGAGGAGTCTTTGTGACAAAAATAATTCAAAATGGAGT
257 CATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGC
6521 C
322 C
** * * * *
6522 GGGGCTCTAGAACGCGTTCTTAGCCAAAAACTGTGATGATTAGTACACGATTTC-GCTAAAAACT
1 GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
** * ** * * * * *
6586 GACAAG-ATAGTTTAATCTGAATTTTTTGCCATAATACTTAGAAAAAATATACAATTTAACGCCA
66 GACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATGCCA
* * * *
6650 AAAGGATTAACATGCTTTTCAAGCTTCTAATATCATTTTTTTTCATTTTTTTCCGAATTAGTTTC
131 AAAAGATTAACGTGCTTTTCAAGCTTCTAATATC--GTTTTTTCATTTTTTTCCGAATTAATTTC
* * * * *
6715 TAATTAAATCGAAATAAAATTGAGATGCTCGTAAAAATAAATCCTTATATCCAATGTGGCTGACT
194 TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGACA
* *
6780 TTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATTATGCAAAA-TGACCC
259 TTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGCC
* ** * * *
6843 GGGTCTCCGGAATGCGTTTTTAGCCAAAAACTGTGATGGCTAGTATACGATTTCGGCTAAAAAAC
1 GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT-AAAAAC
* * * * *
6908 TGACCC-AAAAATTAATTTCTCAATTTTTTGCCACAATACACAGAGAAAATATATAATTCAATGC
65 TGACCCGAAAAGTT-TTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATGC
* * * * * *
6972 CAAAAATATTGACGGGCTTTTCAAGCTTCTAAGATC-TTTTTTTAATTTTTTCCGAATTAATTTC
129 CAAAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTC
* * * * *
7036 TAATTAGATCGAAACAAG---GAGATGCTCGAAAAAACCAAATCCTTATATCCAATATGGCTGAG
194 TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-CAAATCCTTATATCCAATGTGGCTGAC
* * *
7098 ATTTGTTTCGATAAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAATTATGCAAAATTGAGCC
258 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGCC
* * *
7162 GGGGCT-CTGAACACGTTTTTAGCCAAAAACCGTGATGGCTAGTACATGATTTCGGCTAAAAACT
1 GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
* * ** * *
7226 GACCCGAGAAGGTTTTTCAGAATTTTTTGCCACAATAATCAGAAAAAATATAT-ATTCAATGCCA
66 GACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATGCCA
* * * * *
7290 AAAAGATTGACGGGCTTTTCAAGCTTCCAATATCGTCTTTTCATTTTTTTTCCGAATCT-ATTTT
131 AAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCA-TTTTTTTCCGAAT-TAATTTC
* * * * * *
7354 TAATTAAATCGAAACAAGAATGAGATGCTC-AAAGAAATAAATCCTTATATCCAATATGGCTGAG
194 TAATTAAATCGAAACAAGATTCAGATGCTCGTAA-AAACAAATCCTTATATCCAATGTGGCTGAC
* * * * * * * *
7418 ATTTGATTCGATGAATATAGA-AGTTTTAATGAGTCATTCTCCCAAAAATCATGCAAAACTAAGC
258 ATTTGGTTCGATGAATATAGATA-TTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGC
7482 C
322 C
*
7483 GGGGCTCCCGAAACACGTTTTTA
1 GGGGCT-CCGGAACACGTTTTTA
7506 CCCCAAC
Statistics
Matches: 2221, Mismatches: 315, Indels: 120
0.84 0.12 0.05
Matches are distributed among these distances:
316 48 0.02
317 70 0.03
318 166 0.07
319 92 0.04
320 254 0.11
321 336 0.15
322 571 0.26
323 134 0.06
324 219 0.10
325 217 0.10
326 59 0.03
327 51 0.02
328 2 0.00
329 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (322 bp):
GGGGCTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
GACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAATGCCA
AAAAGATTAACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTA
ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGACATT
TGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGCC
Done.