Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015150.1 Corchorus capsularis cultivar CVL-1 contig15171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151752

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1560--1992
50
9.5
50
84
10
455
34
26
31
6
1.83
1672--1975
40
7.2
40
86
8
315
33
26
32
6
1.83
1881--1958
38
2.1
38
97
0
147
35
25
28
10
1.89
1831--1992
88
1.8
88
98
0
315
35
25
30
8
1.85
12228--12261
10
3.3
10
95
4
59
88
11
0
0
0.52
12228--12261
11
3.2
11
91
4
52
88
11
0
0
0.52
12228--12264
18
2.1
18
94
0
65
86
13
0
0
0.57
12227--12264
10
4.0
10
83
13
53
84
15
0
0
0.63
18894--18928
18
1.9
18
88
11
54
40
31
8
20
1.82
25874--26047
87
2.0
87
100
0
348
39
19
19
21
1.93
38542--38801
119
2.2
120
91
1
416
16
25
26
31
1.97
39254--39299
24
1.9
24
95
0
83
6
28
23
41
1.79
47038--47097
29
2.1
29
93
0
102
45
21
3
30
1.68
61929--61963
18
2.0
18
94
5
63
57
11
31
0
1.34
68089--68123
17
2.0
18
88
5
54
54
11
34
0
1.37
75790--75814
1
25.0
1
100
0
50
100
0
0
0
0.00
78517--78550
16
2.1
16
100
0
68
5
17
5
70
1.28
78693--78793
44
2.3
44
87
3
141
25
15
5
52
1.66
79060--79085
11
2.4
11
100
0
52
92
0
7
0
0.39
90522--90554
15
2.2
15
94
0
57
42
24
6
27
1.78
92181--92241
25
2.3
25
86
8
77
63
6
9
19
1.46
112109--112138
12
2.5
12
100
0
60
50
0
40
10
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114897--115063
83
2.0
83
96
0
307
32
11
17
37
1.87
116113--116416
162
1.9
163
91
2
502
23
22
24
30
1.99
116113--116437
87
3.9
87
87
8
485
22
22
24
30
1.99
116686--116730
23
2.0
23
95
0
81
26
22
28
22
1.99
117374--117481
39
2.9
36
86
8
162
29
7
12
50
1.66
117357--117483
36
3.5
36
84
9
179
29
7
11
50
1.67
117763--117791
11
2.6
11
100
0
58
93
0
6
0
0.36
139921--139946
6
4.3
6
100
0
52
34
19
0
46
1.50
141214--141247
6
5.7
6
100
0
68
32
50
17
0
1.47
141320--141518
18
11.1
18
88
0
281
42
7
37
13
1.72
149505--149553
15
3.3
15
82
8
55
48
20
6
24
1.72

Tables:   1

The End!