Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015153.1 Corchorus capsularis cultivar CVL-1 contig15174, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40313

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--44
3
13.7
3
89
0
64
0
26
0
73
0.84
875--899
2
12.5
2
100
0
50
52
0
0
48
1.00
3487--3723
65
3.6
65
90
2
350
24
19
12
43
1.86
7423--7477
20
2.7
20
81
15
67
16
10
9
63
1.51
18374--18438
33
2.0
33
93
0
112
35
35
13
15
1.87
30532--30564
2
16.5
2
100
0
66
48
0
0
51
1.00
31518--31547
13
2.3
13
94
0
51
53
0
10
36
1.35
32471--32512
21
2.0
22
85
4
59
47
11
2
38
1.53
32524--32557
11
3.1
11
86
0
50
26
29
26
17
1.98
34648--34689
21
2.0
22
85
4
59
47
9
2
40
1.49
38071--38108
11
3.5
11
89
10
51
39
0
2
57
1.12

Tables:   1

The End!