Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015157.1 Corchorus capsularis cultivar CVL-1 contig15178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42872

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1930--1971
22
1.9
22
90
0
66
40
14
7
38
1.73
6879--6908
15
2.0
15
93
0
51
33
3
6
56
1.42
9739--9772
2
17.5
2
93
6
61
50
0
0
50
1.00
10994--11032
20
2.0
20
94
0
69
23
20
17
38
1.93
13570--13598
2
14.5
2
100
0
58
48
0
0
51
1.00
21987--22014
7
4.0
7
100
0
56
28
28
14
28
1.95
26843--26873
1
31.0
1
100
0
62
100
0
0
0
0.00
31470--31496
6
4.5
6
100
0
54
0
33
0
66
0.92
33625--33732
53
2.0
53
94
0
189
40
7
6
45
1.58
35565--35684
56
2.1
56
96
0
222
42
18
10
28
1.84
39160--39191
2
16.0
2
100
0
64
50
0
0
50
1.00
42524--42559
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!