Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015161.1 Corchorus capsularis cultivar CVL-1 contig15182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111251

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--5398
968
5.6
960
84
5
6572
35
16
14
33
1.90
1--5398
321
16.7
316
82
6
5961
35
16
14
33
1.90
5389--5495
26
4.1
26
100
0
214
57
14
8
19
1.63
9419--9496
36
2.2
36
97
0
147
38
20
16
24
1.93
27096--27128
2
16.5
2
100
0
66
51
0
0
48
1.00
28875--28925
25
2.0
25
85
11
68
52
1
7
37
1.42
33181--33215
16
2.2
16
89
0
52
14
25
5
54
1.62
38505--38536
15
2.1
15
94
0
55
25
3
21
50
1.64
41196--41242
23
2.0
23
100
0
94
25
27
17
29
1.97
42338--42362
13
1.9
13
100
0
50
56
0
24
20
1.43
45625--45656
3
11.0
3
93
6
57
0
31
0
68
0.90
52961--52997
17
2.1
18
95
5
67
45
5
5
43
1.49
55908--55943
18
2.0
18
94
0
63
13
11
58
16
1.63
60919--60943
3
8.3
3
100
0
50
0
32
0
68
0.90
63242--63358
58
2.0
58
98
1
225
39
11
8
41
1.71
75033--75059
13
2.1
13
100
0
54
62
7
14
14
1.51
85671--85704
9
3.8
9
88
0
50
50
32
17
0
1.47
94107--94144
19
2.0
19
100
0
76
42
10
10
36
1.74
95866--95894
2
14.5
2
100
0
58
48
0
0
51
1.00
98223--98271
23
2.1
23
81
7
55
44
2
10
42
1.49

Tables:   1

The End!