Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015163.1 Corchorus capsularis cultivar CVL-1 contig15184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30309

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2139
322
6.6
320
85
4
2778
33
15
17
33
1.91
2613--2696
3
27.3
3
90
4
132
33
2
1
63
1.15
2767--2796
2
15.5
2
93
6
53
50
0
0
50
1.00
2857--2925
32
2.1
32
86
5
93
33
8
11
46
1.71
3193--3217
11
2.3
11
100
0
50
20
40
24
16
1.91
3324--6224
324
9.0
326
84
4
3429
34
15
15
34
1.89
3324--7030
968
3.9
959
83
5
4470
34
15
16
34
1.90
9986--10033
15
3.2
15
81
0
60
22
60
6
10
1.52
13641--13698
28
2.1
28
100
0
116
37
6
6
48
1.57
21255--21338
42
2.0
41
88
2
123
55
15
10
17
1.67
21601--21639
20
2.1
19
86
13
55
53
17
23
5
1.63

Tables:   1

The End!