Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015164.1 Corchorus capsularis cultivar CVL-1 contig15185, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80339

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2241--2269
6
4.8
6
100
0
58
34
17
13
34
1.89
3483--3525
3
14.3
3
80
0
50
37
39
0
23
1.55
4008--4032
1
25.0
1
100
0
50
0
0
0
100
0.00
7839--7992
75
2.1
75
81
4
177
31
16
24
27
1.96
14975--15013
2
19.5
2
94
0
69
48
0
48
2
1.15
16959--17137
89
2.0
89
88
0
268
27
20
26
25
1.99
28778--28802
6
4.2
6
100
0
50
48
0
52
0
1.00
29482--29548
30
2.3
29
82
7
82
47
11
17
22
1.80
29523--29570
22
2.3
21
85
7
62
47
14
16
20
1.82
32389--32434
22
2.1
22
91
0
74
32
0
30
36
1.58
35698--35726
14
2.1
14
100
0
58
41
6
6
44
1.58
37875--37948
32
2.3
32
92
0
121
50
9
25
14
1.73
37998--38027
6
4.8
6
95
4
51
66
0
33
0
0.92
37975--38023
23
2.1
23
82
14
57
61
0
36
2
1.08
44268--44293
7
3.7
7
100
0
52
57
0
0
42
0.98
60298--60337
21
1.9
21
89
0
62
42
0
2
55
1.13
60866--60899
2
17.0
2
93
0
59
50
2
0
47
1.16
65388--65426
19
2.1
18
85
4
51
41
15
15
28
1.87
66794--66844
17
3.1
16
86
8
66
21
21
21
35
1.96
76263--76288
12
2.2
12
100
0
52
0
26
23
50
1.50

Tables:   1

The End!