Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015165.1 Corchorus capsularis cultivar CVL-1 contig15186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36739
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Found at i:6960 original size:91 final size:93
Alignment explanation
Indices: 6794--6978 Score: 304
Period size: 92 Copynumber: 2.0 Consensus size: 93
6784 TTGATAATAT
* * *
6794 AGAATCACAGACGTTTACCTATATTCTGGAGTTAATTAAACTATGAAAGCGATAAGAACCAAGTC
1 AGAATCACAGACCTTTACCTATATTCTGGAGATAATTAAACTATGAAAGCGATAAGAACCAAATC
6859 TAAAGTTCAGCAAAG-TTACATACTCGA
66 TAAAGTTCAGCAAAGTTTACATACTCGA
*
6886 AGAATCACAGACCTTT-CTCTATATTCTGGAGATGATTAAACTATG-AAGCGATAAGAACCAAAT
1 AGAATCACAGACCTTTAC-CTATATTCTGGAGATAATTAAACTATGAAAGCGATAAGAACCAAAT
6949 CTAAAGTTCAGCAAAGTTTACATACTCGA
65 CTAAAGTTCAGCAAAGTTTACATACTCGA
6978 A
1 A
6979 TGTGCTTCAA
Statistics
Matches: 87, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
91 34 0.39
92 53 0.61
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (93 bp):
AGAATCACAGACCTTTACCTATATTCTGGAGATAATTAAACTATGAAAGCGATAAGAACCAAATC
TAAAGTTCAGCAAAGTTTACATACTCGA
Found at i:21785 original size:24 final size:24
Alignment explanation
Indices: 21758--21806 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
21748 CTATCCCATA
21758 ATATAAGTCCATTTTAACCGTATC
1 ATATAAGTCCATTTTAACCGTATC
21782 ATATAAGTCCATTTTAACCGTATC
1 ATATAAGTCCATTTTAACCGTATC
21806 A
1 A
21807 CAAGAAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (24 bp):
ATATAAGTCCATTTTAACCGTATC
Found at i:21914 original size:19 final size:19
Alignment explanation
Indices: 21873--21916 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
21863 TTATCCCTCT
*
21873 TCTCTCTCCCCCCACTAAG
1 TCTCTCTCCCCCCACTAAC
* * *
21892 TCTCTCTCCTCTCACTTAC
1 TCTCTCTCCCCCCACTAAC
21911 TCTCTC
1 TCTCTC
21917 ATAGTCAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.11, C:0.50, G:0.02, T:0.36
Consensus pattern (19 bp):
TCTCTCTCCCCCCACTAAC
Found at i:25003 original size:41 final size:41
Alignment explanation
Indices: 24958--25134 Score: 192
Period size: 41 Copynumber: 4.1 Consensus size: 41
24948 TGATATTGAT
* *
24958 ATATAGTAACATTGAGTTGATATCATACGGAATACATATCG
1 ATATAGTAACATTGAATTGGTATCATACGGAATACATATCG
* *
24999 ATATAGTGATATATAATAACATTGAATTGGTATCACACGTAATACATATCG
1 ATATA--G--------TAACATTGAATTGGTATCATACGGAATACATATCG
*
25050 ATATAGTAACATTGAATTGGTATCATACGAAATACATATCG
1 ATATAGTAACATTGAATTGGTATCATACGGAATACATATCG
* * *
25091 ATATAGTAACATTAAACTGGTATCATACGGAATACATATTG
1 ATATAGTAACATTGAATTGGTATCATACGGAATACATATCG
25132 ATA
1 ATA
25135 ATCTATCGAG
Statistics
Matches: 116, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
41 78 0.67
43 1 0.01
49 1 0.01
51 36 0.31
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (41 bp):
ATATAGTAACATTGAATTGGTATCATACGGAATACATATCG
Found at i:25019 original size:51 final size:51
Alignment explanation
Indices: 24954--25056 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 51
24944 AGTTTGATAT
* * *
24954 TGATATATAGTAACATTGAGTTGATATCATACGGAATACATATCGATATAG
1 TGATATATAATAACATTGAATTGATATCACACGGAATACATATCGATATAG
* *
25005 TGATATATAATAACATTGAATTGGTATCACACGTAATACATATCGATATAG
1 TGATATATAATAACATTGAATTGATATCACACGGAATACATATCGATATAG
25056 T
1 T
25057 AACATTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.34
Consensus pattern (51 bp):
TGATATATAATAACATTGAATTGATATCACACGGAATACATATCGATATAG
Found at i:25885 original size:103 final size:103
Alignment explanation
Indices: 25732--25937 Score: 385
Period size: 103 Copynumber: 2.0 Consensus size: 103
25722 TCGAGTTCAG
*
25732 GCCGCTAAGGATTTGAGGTAATTAAAATTTGAGTTTAGGGTTTAGGGTGAGACTTTGCTGGGAGA
1 GCCGCTAAGGATTTGAGGTAATTAAAATTTCAGTTTAGGGTTTAGGGTGAGACTTTGCTGGGAGA
*
25797 GATACGTTGTTTCCAAATTTTCAATCTGTCTTTAATTT
66 GATACGTTGTTTCCAAAATTTCAATCTGTCTTTAATTT
25835 GCCGCTAAGGATTTGAGGTAATTAAAATTTCAGTTTAGGGTTTAGGGTGAGACTTTGCTGGGAGA
1 GCCGCTAAGGATTTGAGGTAATTAAAATTTCAGTTTAGGGTTTAGGGTGAGACTTTGCTGGGAGA
*
25900 GATACGTTGTTTCCAAAATTTCAGTCTGTCTTTAATTT
66 GATACGTTGTTTCCAAAATTTCAATCTGTCTTTAATTT
25938 ATTTAGGTGT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.38
Consensus pattern (103 bp):
GCCGCTAAGGATTTGAGGTAATTAAAATTTCAGTTTAGGGTTTAGGGTGAGACTTTGCTGGGAGA
GATACGTTGTTTCCAAAATTTCAATCTGTCTTTAATTT
Found at i:26862 original size:18 final size:18
Alignment explanation
Indices: 26836--26886 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
26826 GAAAGTATAG
* *
26836 CTCATCTTCTGATTCAGA
1 CTCACCTTCAGATTCAGA
*
26854 CTCACCTTCAGACTCAGA
1 CTCACCTTCAGATTCAGA
* *
26872 GTCAGCTTCAGATTC
1 CTCACCTTCAGATTC
26887 TGATTCTGAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (18 bp):
CTCACCTTCAGATTCAGA
Found at i:33152 original size:48 final size:47
Alignment explanation
Indices: 33062--33176 Score: 124
Period size: 48 Copynumber: 2.4 Consensus size: 47
33052 CTTTTCCGCA
* * * * ***
33062 AATTGTGGCCCCCGAAAGTCGTGATGTTTAATGTTTGTCTTTTCGGTT
1 AATTTTGG-CCCCGAAAGTCGTGATGGTAAATGTTTGGCTTTTCGACC
*
33110 ATTTTTGGCCCCTGAAAGTCGTGATGGTAAACT-TTTGGCTTTTCGACC
1 AATTTTGGCCCC-GAAAGTCGTGATGGTAAA-TGTTTGGCTTTTCGACC
33158 AATTTTGGCCCCGAAAGTC
1 AATTTTGGCCCCGAAAGTC
33177 TTAATGCTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
47 11 0.20
48 44 0.79
49 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.37
Consensus pattern (47 bp):
AATTTTGGCCCCGAAAGTCGTGATGGTAAATGTTTGGCTTTTCGACC
Found at i:33208 original size:47 final size:48
Alignment explanation
Indices: 33157--33248 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
33147 GCTTTTCGAC
* * *
33157 CAATTTTGGCCC-CGAAAGTCTTAATGCTTATCATTTGCCTTTTTGGT
1 CAATTTTAGCCCTCGAAAGTCATAATGCTTAGCATTTGCCTTTTTGGT
* * *
33204 CAATTTTAGCCCTCGAAAGTCATGATGGTTAGCATTTGTCTTTTT
1 CAATTTTAGCCCTCGAAAGTCATAATGCTTAGCATTTGCCTTTTT
33249 TTTTTTGTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
47 11 0.29
48 27 0.71
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.42
Consensus pattern (48 bp):
CAATTTTAGCCCTCGAAAGTCATAATGCTTAGCATTTGCCTTTTTGGT
Found at i:33880 original size:17 final size:17
Alignment explanation
Indices: 33858--33920 Score: 126
Period size: 17 Copynumber: 3.7 Consensus size: 17
33848 AGTGTTAACC
33858 TTTTGCATTCGACCATA
1 TTTTGCATTCGACCATA
33875 TTTTGCATTCGACCATA
1 TTTTGCATTCGACCATA
33892 TTTTGCATTCGACCATA
1 TTTTGCATTCGACCATA
33909 TTTTGCATTCGA
1 TTTTGCATTCGA
33921 GTGTTGTGAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 46 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (17 bp):
TTTTGCATTCGACCATA
Found at i:36127 original size:330 final size:331
Alignment explanation
Indices: 33925--36739 Score: 3435
Period size: 330 Copynumber: 8.5 Consensus size: 331
33915 ATTCGAGTGT
* * * * *
33925 TGTGATGGTTAGAACATGATTTCGGCTAAAATTTTGCAAAAATTGTCCTGAAATATTTTTCCTCA
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGATTTTTCCTCA
* * * *
33990 ACATTTGACAAAAATAATCGTAAACAATATATAATTAAACACCAAAAAGATTGGAGGGCTTTTCA
66 ATATTTGGCAAAAATAATCGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTTCA
**
34055 CTCTTCTAACATCGTTTTTCAAATTTTTTTCTGAATTAATTTCTAATTAAAT-CGAAACAAGATT
131 CTCTTCTAACATCGTTTTTCTTA-TTTTTTCTGAATTAATTTCTAATTAAATGC-AAACAAGATT
* *
34119 CAGATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTAAGATTTGGTTAGCTGAATATAGAT
194 CAGATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGAT
* * * *
34184 ATTTCACGGAGTCTTGGTGCATAAAATCATGCAAAACTGAGTCGGCGTCCCAGAACGCGTTTTTA
259 ATTTCAAGGAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAACGCGTTTTTA
*
34249 GACAAAAC
324 GCCAAAAC
* * * * * * * **
34257 CGTGATGGTTACTACACAATTTCGGTTAAAATTTTGCTAAAATTGACCCGATAGATTTTTATTCA
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGATTTTTCCTCA
* * * * *
34322 ATTTTTGGCAAAAATACTCGTAAACAATATGTAATTCAACACCAAAAAGATTGGAGGGTTTTTCG
66 ATATTTGGCAAAAATAATCGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTTCA
* * * * *
34387 CGCTTCTAACAACGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATGGAAACAAAATTAA
131 CTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATGCAAACAAGATTCA
* * *
34452 AATGCTCGTAAAAACAATTCCTTAAATCCAATGTTGCTGAGATTTGGTTAGATGAATAGAGATAT
196 GATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGATAT
* * * * * * * *
34517 TCCACA-GAGTCTTGACACAAAAAATCACGCAAAACTGAGCCGGTGCCCCGGAA-GACGTTTTCA
261 TTCA-AGGAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAACG-CGTTTTTA
34580 GCCAAAAC
324 GCCAAAAC
* *
34588 TGTGATGGTGGTTACTACACGATTTCGGCAAAAATTTTGCGAAAATTGTCCC-AAA-ATTTTTTC
1 TGTGA---TGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGA-TTTTTC
* *
34651 CTCAATATTTGGCAAAAATAATCGTAAACAATATATAATTCAATACCAAAAAGATTGGAGGAATT
62 CTCAATATTTGGCAAAAATAATCGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATT
*
34716 TTCACTCTTCTAACTTCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATCGC-AACAAG
127 TTCACTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAAT-GCAAACAAG
* * *
34780 ATTAAGAAGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGTTTTGGTTAGATGAATATA
191 ATTCAGATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATA
* * * * *
34845 GATATTTCATGGAGTCTTGGCGCATAAAATCATGCAATACTGAGTCGGCG-CTCGGAAGGCGTCT
256 GATATTTCAAGGAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAACGCGTTT
*
34909 TTAGACAAAAC
321 TTAGCCAAAAC
* * * **
34920 CGTGATGGTTAGTACACGATTTCGGTTAAAATTTTGCGAAAATTGGCCC-AATAGATTTTTATTC
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAA-AGATTTTTCCTC
* * * * * * *
34984 AATTTTTGG-AAAAATACTCCTAAA-ATATATGTAATTCAACCCCAAAATGATTGGAGGGTTTTT
65 AATATTTGGCAAAAATAATCGTAAACA-ATATATAATTCAACACCAAAAAGATTGGAGGGATTTT
* * * * * * *
35047 CGCGCTTCTAATATCGTTTTTCTTATTTTTTATGAATTAATTTTTAATGAAATGGAAACAAGATT
129 CACTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATGCAAACAAGATT
* *
35112 CAGATGCTCGTAAAAAAAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATAAATATAGAT
194 CAGATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGAT
* * *
35177 ATTTCAAGCAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCTCAGAACGCGTTTTTA
259 ATTTCAAGGAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAACGCGTTTTTA
*
35242 GCTAAAAC
324 GCCAAAAC
* * ** *
35250 CGTGAGGGTTACCACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGAGTTTTCCTCA
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGATTTTTCCTCA
* * * * * *
35315 ATATTAGGCACAAATAATCTTAAATAATATATAATTCAACACCAAAAATATTGGAGGGCTTTTCA
66 ATATTTGGCAAAAATAATCGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTTCA
35380 CTCTTCTAACATCGTTTTTCTTA-TTTTTCTGAATTAATTTCTAATTAAAT-CAAACAAGATTCA
131 CTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATGCAAACAAGATTCA
* * * * *
35443 GATGCTCGTAAAAACAATTCCTTAAATCCAACGGTGCTTAGACTTAGTTAAATGAATATAGATAT
196 GATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGATAT
* * * * *
35508 TTCAAGGGGTCTTGACACCA-AAAATCATGCAAAACTGAG-CTGGAGCCCC-GAACGGTGTTTTT
261 TTCAAGGAGTCTTGGC-GCATAAAATCATGCAAAACTGAGTC-GGCGCCCCGGAAC-GCGTTTTT
*
35570 AGCAAAAAC
323 AGCCAAAAC
* * *
35579 TGTGATGG---GTACACGATTTCGGCTAAAATTTTGCGCAAATTGTCCCGAAATA-TTTACCTCA
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGATTTTTCCTCA
* * * *
35640 ATATTTTGCAAAAATAAT-GCAAAAAAATATATAATTCAACACCAAAAATATTGGAGGGATTTTC
66 ATATTTGGCAAAAATAATCG-TAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTTC
* * * *
35704 ACTCTTCTAACTTCGTTTTTCTTATTTTTTCTAAATTAACTTATAATTAAATCGC-AACAAGATT
130 ACTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAAT-GCAAACAAGATT
* * *
35768 AAGAAGCTCGTAAAAAAAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGAT
194 CAGATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGAT
* *
35833 ATTTCAAGTAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCAGCGCCCCGGAACGCGTTTTTA
259 ATTTCAAGGAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAACGCGTTTTTA
35898 GCCAAAAC
324 GCCAAAAC
* * * * *
35906 TGTGATAGTTAGTACACGATTCCGGCTAAAATTTTGCGAAAATAGTCCCGAAAAAGTTTTCCTCA
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGATTTTTCCTCA
* * *
35971 ATATTAGGCAAAAATAATCTTAAACAATATATAATTCAACACCAAAAAGATTAGAGGGATTTTCA
66 ATATTTGGCAAAAATAATCGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTTCA
* * * *
36036 CTCTTCGAACATCGTTTTTCTTATTTTTTCTAAATTAATTTATAATTAAAT-CAATCAAGATTCA
131 CTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATGCAAACAAGATTCA
* * *
36100 GATACTCGTAAAAACAATTCCTTAAATCCAACGGTGCTGAGATTTGGTTAGATGAATACAGATAT
196 GATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGATAT
* * ** * * * *
36165 TTCAAGGAGTCTTGACACCGAAAATCATGCAAAACTGAGCCGGTGCCCCAG-ACGGCATTTTTAG
261 TTCAAGGAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAAC-GCGTTTTTAG
36229 CCAAAAC
325 CCAAAAC
* * * * * * *
36236 TGTGATGGTTAGTTCACGATTTTGGATAAAATTTTGCAAAAATTGACCCGAAATATTTTTCATCA
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGATTTTTCCTCA
* * * * *
36301 ATTTTTTGG-GAAAAT-GTACGTAAACAATATATAATTAAACACCAAAAAGATTGGAGGGCTTTT
66 A-TATTTGGCAAAAATAAT-CGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTT
* * * * * **
36364 CA-TAATTATAATATCGTTTTTCTTA-TTTTTCTGAATTAATTTCTCATTATAT-CGAAATTAGA
129 CACT-CTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATGC-AAACAAGA
* ** * * ** * *
36426 TTTAGATGCTTATAAAAACAAATCCTTAAATCTAATCTTTCTGAGATTTAGTTAGATGAATATAG
192 TTCAGATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAG
* * * * * *
36491 ATATTTCATGGAGTCTTAGCGCCA-AAAATCATGCAAAACTAAGGCGGTGCCCCGGAACGCGCTT
257 ATATTTCAAGGAGTCTTGGCG-CATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAACGCGTTT
*
36555 TTAG-CAGAAGC
321 TTAGCCA-AAAC
* * * * *
36566 CGTGATGGTTAGTACACGATTTCGGCTAAAATTATGCAAAAAATTGTCCTGAAGGATTTTTCCTC
1 TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC-GAAAATTGTCCCGAAAGATTTTTCCTC
* * * *
36631 AATATTTGGCAAAAATAATCTTAAAAAATATGTAATTCAACAGCAAAAAGATTGGAGGG-TTTTC
65 AATATTTGGCAAAAATAATCGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTTC
* * *
36695 ACTATTCTAAAATCGTTTTTCTTA-CTTTTCTGAATTAATTTCTAA
130 ACTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAA
Statistics
Matches: 2133, Mismatches: 304, Indels: 94
0.84 0.12 0.04
Matches are distributed among these distances:
325 87 0.04
326 66 0.03
327 128 0.06
328 13 0.01
329 405 0.19
330 606 0.28
331 412 0.19
332 154 0.07
333 222 0.10
334 40 0.02
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (331 bp):
TGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCGAAAATTGTCCCGAAAGATTTTTCCTCA
ATATTTGGCAAAAATAATCGTAAACAATATATAATTCAACACCAAAAAGATTGGAGGGATTTTCA
CTCTTCTAACATCGTTTTTCTTATTTTTTCTGAATTAATTTCTAATTAAATGCAAACAAGATTCA
GATGCTCGTAAAAACAATTCCTTAAATCCAATGGTGCTGAGATTTGGTTAGATGAATATAGATAT
TTCAAGGAGTCTTGGCGCATAAAATCATGCAAAACTGAGTCGGCGCCCCGGAACGCGTTTTTAGC
CAAAAC
Done.