Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015166.1 Corchorus capsularis cultivar CVL-1 contig15187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90156

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
410--2398
330
6.1
330
86
3
2662
34
16
15
33
1.90
2218--2602
206
1.9
205
91
0
635
35
16
11
36
1.85
14901--14931
2
15.5
2
100
0
62
51
48
0
0
1.00
15943--15976
15
2.2
16
94
5
61
73
5
0
20
1.04
16392--16426
18
1.9
18
88
0
52
14
8
8
68
1.38
16571--16631
31
1.9
32
90
3
97
21
8
19
50
1.73
16580--16642
31
2.0
31
87
3
90
23
11
15
49
1.77
16826--16891
31
2.1
32
88
5
100
28
18
4
48
1.67
17165--17288
22
5.6
22
85
2
126
35
11
17
35
1.86
17165--17288
66
1.9
66
80
6
144
35
11
17
35
1.86
17288--17346
22
2.5
24
78
5
68
35
6
18
38
1.78
17392--17523
22
5.9
22
71
11
81
34
10
19
34
1.86
17475--17828
44
8.0
43
69
14
193
41
9
13
35
1.76
17478--17803
22
14.6
23
70
17
142
41
9
13
35
1.76
17551--17673
43
2.7
44
77
15
126
43
8
12
34
1.73
17567--17827
22
11.8
22
73
11
153
42
9
12
35
1.74
17911--17975
19
3.4
19
84
2
76
44
12
21
21
1.85
17969--18126
22
7.4
22
68
11
94
43
9
13
34
1.76
18012--18126
44
2.8
40
77
16
110
46
9
13
30
1.76
18151--18230
23
3.5
23
84
5
92
38
7
13
40
1.73
18197--18252
22
2.5
22
85
0
76
39
12
8
39
1.75
18300--18365
22
3.0
22
75
4
60
30
12
18
39
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25572--25628
17
3.4
17
83
11
64
22
19
21
36
1.95
26075--26109
16
2.2
17
90
10
56
37
0
5
57
1.23
63866--63949
30
3.1
30
65
28
78
21
3
52
22
1.62
63843--63955
51
2.2
51
90
0
172
20
5
53
21
1.65
63894--64063
66
2.6
66
93
1
279
21
7
50
20
1.72
64032--64216
51
3.4
55
86
8
188
20
10
47
22
1.80
64067--64220
51
3.0
51
94
0
254
20
9
48
22
1.77
64402--64428
6
4.5
6
100
0
54
51
0
48
0
1.00
72804--72845
21
2.0
21
81
9
50
38
11
14
35
1.83
77439--77590
51
2.9
51
80
4
171
30
20
23
25
1.99
88782--88816
2
17.5
2
93
0
61
51
2
0
45
1.16
89879--89916
11
3.5
11
89
10
51
39
0
2
57
1.12

Tables:   1

The End!