Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015168.1 Corchorus capsularis cultivar CVL-1 contig15189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44919

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1925--1958
13
2.4
14
90
9
52
67
0
2
29
1.05
3732--3764
16
2.1
17
88
11
52
63
18
0
18
1.31
4098--4127
2
15.0
2
100
0
60
50
0
0
50
1.00
11734--11760
3
9.0
3
100
0
54
66
33
0
0
0.92
18906--19000
49
1.9
49
100
0
190
41
18
6
33
1.76
18917--19016
49
2.1
49
86
1
139
45
15
5
35
1.68
28593--29012
24
16.9
24
64
19
121
15
7
55
21
1.65
28566--28699
66
2.0
66
84
2
171
12
7
57
22
1.60
28748--29151
78
5.1
78
85
5
497
17
5
54
21
1.64
28615--28837
96
2.3
96
87
1
313
15
8
55
21
1.66
29048--29107
24
2.5
24
86
0
84
13
6
56
23
1.60
29062--29115
24
2.2
24
80
0
63
14
5
55
24
1.61
29156--29307
30
4.9
30
84
9
169
12
7
57
22
1.59
29129--29307
66
2.8
62
79
10
166
12
7
58
22
1.58
29231--29306
36
2.1
36
92
0
125
11
6
56
25
1.59
29255--29311
27
2.1
27
83
0
69
15
5
57
21
1.57
29272--29319
24
2.0
24
91
0
78
14
2
56
27
1.50
35021--35082
29
2.1
30
93
3
108
37
16
29
17
1.92
44706--44783
33
2.4
33
91
2
122
29
5
14
51
1.63

Tables:   1

The End!