Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015169.1 Corchorus capsularis cultivar CVL-1 contig15190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22592
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:6038 original size:25 final size:25

Alignment explanation


    Indices: 6010--6076  Score: 125
    Period size: 25  Copynumber: 2.7  Consensus size: 25

       6000 GGGAGGTCAT

                                     
       6010 AAATGTCAAGAAGACATGCAAAAAA
          1 AAATGTCAAGAAGACATGCAAAAAA

                               *     
       6035 AAATGTCAAGAAGACATGCCAAAAA
          1 AAATGTCAAGAAGACATGCAAAAAA

                             
       6060 AAATGTCAAGAAGACAT
          1 AAATGTCAAGAAGACAT

       6077 TGATAACATA


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  25   41  1.00

ACGTcount: A:0.57, C:0.13, G:0.16, T:0.13


Consensus pattern (25 bp):   
AAATGTCAAGAAGACATGCAAAAAA

Found at i:10647 original size:14 final size:14

Alignment explanation


    Indices: 10628--10661  Score: 52
    Period size: 13  Copynumber: 2.5  Consensus size: 14

      10618 TAATATATAC

                  *       
      10628 AAAAAATTCATT-G
          1 AAAAAAATCATTGG

                          
      10641 AAAAAAATCATTGG
          1 AAAAAAATCATTGG

                   
      10655 AAAAAAA
          1 AAAAAAA

      10662 GGGATCCTCA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  13   11  0.58
  14    8  0.42

ACGTcount: A:0.65, C:0.06, G:0.09, T:0.21


Consensus pattern (14 bp):   
AAAAAAATCATTGG
Done.