Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001517.1 Corchorus capsularis cultivar CVL-1 contig01517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1010
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40


Found at i:539 original size:18 final size:18

Alignment explanation


    Indices: 516--551  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        506 TTCTAATTTC

                              
        516 TATGTGTATTAAATTACT
          1 TATGTGTATTAAATTACT

                              
        534 TATGTGTATTAAATTACT
          1 TATGTGTATTAAATTACT

        552 ATAGTATGAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50


Consensus pattern (18 bp):   
TATGTGTATTAAATTACT
Done.