Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015178.1 Corchorus capsularis cultivar CVL-1 contig15199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100167

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14393--14430
20
1.9
20
94
0
67
50
2
0
47
1.15
14530--14573
22
2.0
22
86
8
63
40
11
4
43
1.61
14588--14756
22
7.7
22
69
10
105
35
13
11
40
1.80
14856--14896
22
1.9
21
90
5
64
36
14
4
43
1.67
14878--14956
32
2.5
31
85
4
113
36
13
12
36
1.83
14936--15020
23
3.7
23
87
1
109
37
15
9
37
1.80
14935--15246
22
14.7
22
69
17
162
33
14
9
41
1.79
15191--15246
19
2.8
20
81
8
78
28
16
10
44
1.80
15352--15658
22
13.8
22
71
11
180
34
14
9
40
1.79
15675--15737
22
2.9
22
79
9
65
33
17
9
39
1.82
15776--15878
22
4.6
22
82
7
84
37
18
10
33
1.85
15776--15920
44
3.3
43
80
7
112
35
17
12
33
1.88
15823--15920
22
4.5
22
87
2
135
33
16
14
35
1.89
15820--15950
22
6.0
22
79
11
62
35
15
11
37
1.83
16118--16154
19
1.9
19
89
10
58
64
0
5
29
1.15
16469--16534
31
2.1
31
88
5
98
46
4
19
28
1.69
16918--16948
6
5.2
6
100
0
62
35
0
16
48
1.46
18564--18624
21
2.9
21
78
9
70
39
18
36
6
1.76
18567--18622
18
3.1
18
77
10
60
39
17
35
7
1.78
18582--18652
30
2.4
30
79
9
74
38
11
39
11
1.77
18591--18646
27
2.1
27
86
0
76
37
12
41
8
1.74
26358--26382
13
1.9
13
100
0
50
32
0
24
44
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39351--39377
2
13.5
2
100
0
54
48
0
0
51
1.00
58460--58495
18
2.0
18
100
0
72
27
11
27
33
1.91
63180--63220
7
5.9
7
100
0
82
58
41
0
0
0.98
63791--63820
2
15.0
2
100
0
60
50
0
0
50
1.00
65709--65748
21
1.9
21
100
0
80
20
25
15
40
1.90
68892--68920
7
4.1
7
100
0
58
27
0
44
27
1.54
72427--72472
2
23.0
2
84
8
58
45
4
2
47
1.34
78514--78562
16
3.1
16
88
2
64
77
14
4
4
1.06
78519--78563
15
2.9
15
90
3
63
82
13
2
2
0.86
91501--91639
31
4.5
31
81
5
165
30
26
25
17
1.97
91503--91647
61
2.4
61
83
2
175
32
26
24
16
1.96
92926--92996
29
2.4
29
80
2
79
40
25
11
22
1.87
95449--95496
21
2.3
21
78
7
53
8
8
66
16
1.42
97543--97625
40
2.1
40
90
0
130
22
14
12
50
1.76
98502--98549
22
2.0
26
84
15
68
37
2
12
47
1.53

Tables:   1

The End!