Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015179.1 Corchorus capsularis cultivar CVL-1 contig15200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30565
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:305 original size:53 final size:53
Alignment explanation
Indices: 225--331 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
215 ACAGTTGAGC
* *
225 AGTCTTTCCAAGTCATTGCTGAGTTTATTAGATTTCGTTTGTCTGGTCTTCCT
1 AGTCTTTCCAAATCATTGCTGAGTTTATTAGATTTCGTTTGTCTGATCTTCCT
278 AGTCTTTCCAAATCATTGCTGAGTTTATTAGATTTCGTTTGTCTGATCTTCCT
1 AGTCTTTCCAAATCATTGCTGAGTTTATTAGATTTCGTTTGTCTGATCTTCCT
331 A
1 A
332 ATATTGCTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.47
Consensus pattern (53 bp):
AGTCTTTCCAAATCATTGCTGAGTTTATTAGATTTCGTTTGTCTGATCTTCCT
Found at i:10811 original size:19 final size:19
Alignment explanation
Indices: 10787--10828 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
10777 CAATAAATTA
10787 AATTTTGTCTGGAGAGAGG
1 AATTTTGTCTGGAGAGAGG
*
10806 AATTTTGTTTGGAGAGAGG
1 AATTTTGTCTGGAGAGAGG
10825 AATT
1 AATT
10829 AGATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.02, G:0.33, T:0.36
Consensus pattern (19 bp):
AATTTTGTCTGGAGAGAGG
Found at i:12404 original size:19 final size:19
Alignment explanation
Indices: 12380--12417 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
12370 TGTTATAAAT
12380 ATGCTGTGAACTGAGTTGA
1 ATGCTGTGAACTGAGTTGA
12399 ATGCTGTGAACTGAGTTGA
1 ATGCTGTGAACTGAGTTGA
12418 CCGTCTGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.32
Consensus pattern (19 bp):
ATGCTGTGAACTGAGTTGA
Found at i:18962 original size:2 final size:2
Alignment explanation
Indices: 18955--18982 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
18945 ATCCTTTAGC
18955 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18983 CAAAGGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21460 original size:2 final size:2
Alignment explanation
Indices: 21455--21484 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21445 TATGTATGTG
21455 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21485 GTACGTAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22582 original size:133 final size:133
Alignment explanation
Indices: 22422--22687 Score: 532
Period size: 133 Copynumber: 2.0 Consensus size: 133
22412 AGGTGGAAAC
22422 AAGCAAGAAATCATCAATTAATTATGAGTAAAAATTGGATGTAAATTTGATTTGGCTATATACTC
1 AAGCAAGAAATCATCAATTAATTATGAGTAAAAATTGGATGTAAATTTGATTTGGCTATATACTC
22487 CTATACATTTACATTATTTTCTTTCCCAAATAATTAAAGAAGTTCACCAATGATGAGAATATTCG
66 CTATACATTTACATTATTTTCTTTCCCAAATAATTAAAGAAGTTCACCAATGATGAGAATATTCG
22552 TTA
131 TTA
22555 AAGCAAGAAATCATCAATTAATTATGAGTAAAAATTGGATGTAAATTTGATTTGGCTATATACTC
1 AAGCAAGAAATCATCAATTAATTATGAGTAAAAATTGGATGTAAATTTGATTTGGCTATATACTC
22620 CTATACATTTACATTATTTTCTTTCCCAAATAATTAAAGAAGTTCACCAATGATGAGAATATTCG
66 CTATACATTTACATTATTTTCTTTCCCAAATAATTAAAGAAGTTCACCAATGATGAGAATATTCG
22685 TTA
131 TTA
22688 TCATTAGTAC
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 133 1.00
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (133 bp):
AAGCAAGAAATCATCAATTAATTATGAGTAAAAATTGGATGTAAATTTGATTTGGCTATATACTC
CTATACATTTACATTATTTTCTTTCCCAAATAATTAAAGAAGTTCACCAATGATGAGAATATTCG
TTA
Found at i:26819 original size:23 final size:23
Alignment explanation
Indices: 26793--26849 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
26783 ATGGTAAGGT
26793 CGCGGGTCGCGACC-AGGACATGG
1 CGCGGGTCGCGACCTA-GACATGG
* *
26816 CGCGGGTTGCGACCTAGCCATGG
1 CGCGGGTCGCGACCTAGACATGG
*
26839 CGCCGGTCGCG
1 CGCGGGTCGCG
26850 CGCGACTAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 28 0.97
24 1 0.03
ACGTcount: A:0.12, C:0.33, G:0.42, T:0.12
Consensus pattern (23 bp):
CGCGGGTCGCGACCTAGACATGG
Found at i:26857 original size:80 final size:80
Alignment explanation
Indices: 26717--26876 Score: 232
Period size: 80 Copynumber: 2.0 Consensus size: 80
26707 AAGAAAGCCT
* * * *
26717 GGTCGCGACATGGCCAAGGCGCAGGTTGCGACCTAGCTAAGGCGCCGGTTGCGCATGACTAGCAC
1 GGTCGCGACATGGACAAGGCGCAGGTTGCGACCTAGCCAAGGCGCCGGTCGCGCACGACTAGCAC
26782 CATGGTAAGGTCGCG
66 CATGGTAAGGTCGCG
* * * *
26797 GGTCGCGACCA-GGACATGGCGCGGGTTGCGACCTAGCCATGGCGCCGGTCGCGCGCGACTAGCA
1 GGTCGCGA-CATGGACAAGGCGCAGGTTGCGACCTAGCCAAGGCGCCGGTCGCGCACGACTAGCA
26861 CCATGGTAAGGTCGCG
65 CCATGGTAAGGTCGCG
26877 ATCCAAAACG
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 69 0.97
81 2 0.03
ACGTcount: A:0.18, C:0.29, G:0.38, T:0.15
Consensus pattern (80 bp):
GGTCGCGACATGGACAAGGCGCAGGTTGCGACCTAGCCAAGGCGCCGGTCGCGCACGACTAGCAC
CATGGTAAGGTCGCG
Found at i:28807 original size:326 final size:323
Alignment explanation
Indices: 26883--30561 Score: 4243
Period size: 326 Copynumber: 11.3 Consensus size: 323
26873 CGCGATCCAA
** * * *
26883 AACGCGTTTTTA-GGCAAAAACTGTGATGGTTAGTACACGATTTTGGTTAAAAACTGACCCGAAA
1 AACGCGTTTTTACCCCAAAAACCGTGAT-GTTAGTACACGATTTCGGCTAAAAACTGACCCG-AA
*
26947 AG-TTTTTTCTCAATTTTTTGCCACAGA-ACTCAGAAAAAATATATAATTCAAGGCCAAAAAGAT
64 AGTTTTTTTCTCAATTTTTTGCCACA-ATACTCAGAAAAAATATATAATTCAATGCCAAAAAGAT
* * *
27010 TGACGGGCTTTTCAAGCTTCTAATATCG-TTTTTTTCATTTTTTTTCGAGTTAATTTCTAATTAA
128 TGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTTATTTTTTTCCGAATTAATTTCTAATTAA
* * *
27074 ATCGAAATAAGATTGAGATGTTCGAAAAAACAAATCCTTATATCCAATATGACTGAGATTTAGTT
193 ATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTT-GTT
** * * *
27139 CGATGAATATAGATATTTCAAGGAGTCTCCCTGGCAAAAATCATGCGAAATTGAGTCGGGGCTCT
257 CGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTC-
27204 CGG
321 CGG
* * *
27207 AACGCGTTTTTACCCCCAAAACCGTGATGGTTAGTATTAGTAAACGATTTCGGCTGAAAACTGAC
1 AACGCGTTTTTACCCCAAAAACCGTGA----T-G--TTAGTACACGATTTCGGCTAAAAACTGAC
* * *
27272 CCGAAAAG-TTCTTTCTCAATTTTTTGTCA-ATATACTCAGAAAAAATATATAATTCAATGTCAA
59 CCG-AAAGTTTTTTTCTCAATTTTTTGCCACA-ATACTCAGAAAAAATATATAATTCAATGCCAA
* * * *
27335 AAATATTGACAGGCTTTCCAAGCTTGTAATATCGTTTTTTCTTT-TTTTTCTTCCCGAATTAATT
122 AAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTT-TTTATTTTT-TT-CCGAATTAATT
*
27399 TCTAATTAAATCGAAACAATATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAA-ATGGCTG
184 TCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAATATGGCTG
* * *
27463 AGACTTTGTTCGATGAATATAGGTATTTCAAGGAGTCTTTCTGCCCAAAATCATGTAAAATTGAG
248 AGA-TTTGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAG
* *
27528 ACGGGCCTCCGG
312 CCGGGGCTCCGG
* ** * * **
27540 AAGGCGTTTTTA-GGCAAAAA-C-TG-TG--A-TACACGAATTCGGTTAAAAACTGATCCAAAAA
1 AACGCGTTTTTACCCCAAAAACCGTGATGTTAGTACACGATTTCGGCTAAAAACTGA-CCCGAAA
* * *
27598 G-TTTTTTCTCAATTTTTTGCCACAGTACTCAGAAAAAACATATAATTCAATGCAAAAAAGATTG
65 GTTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTG
* * * *
27662 ACGGGCTTATCAAGCTTCTAATTTCGTTTTTTTTTTTCATTTTTTTCAGAATAAATTTCTAATTA
130 ACGGGCTTTTCAAGCTTCTAATATCG--TTTTTTTTT-ATTTTTTTCCGAATTAATTTCTAATTA
* * * *
27727 AATCGAAACAAGATTAAGATACTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGTGAGTTTG
192 AATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAATATGGCTGAGA-TTTG
*
27792 TTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCGAAATTGAGCCGGGGCT
255 TTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCT
27857 CCCGG
320 -CCGG
* * * * * *
27862 AACGCATTTTTACCTCAAAAA-C--AACG-TA-T--ACGATTTCGGCTGAAAACTGACGCGAAAT
1 AACGCGTTTTTACCCCAAAAACCGTGATGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAA-
*
27920 GTTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGACAAAAAGATTG
65 GTTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTG
* * *
27985 ATGGGCTTTCCAAGCTTGTAATATCGTTTTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
130 ACGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTT-ATTTTTTTCCGAATTAATTTCTAATTAAA
* * * *
28050 TCGAAACAAGATTTAGATGCTAGAAAAAAACAAATCCTTATATCCAAAATGGTTGAGACTTTGTT
194 TCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAATATGGCTGAGA-TTTGTT
* * * *
28115 CGATTAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCAGGGCTTC
257 CGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGC-TC
**
28180 CAA
321 CGG
* * *
28183 AACACGTTTTTATCCCAAAAACCGTGATGGTTAGTATACGATTTCGGCTAAAAACTGACCCGAAA
1 AACGCGTTTTTACCCCAAAAACCGTGAT-GTTAGTACACGATTTCGGCTAAAAACTGACCCG-AA
* * * ***
28248 AGTTTTTTTCTCAATCTTTCGCCATAATACTCAGAAAAAATATATAATTCAACATCAAAAAGATT
64 AGTTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATT
* * * * * * * * *
28313 GATGGGGTTTTCACGCTTCTAATATCG--TTTTTTCAATTTTTTCTGAATTAATTTCAAAATAGA
129 GACGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTTATTTTTTTCCGAATTAATTTCTAATTAAA
* * * *
28376 TCGAAACAAGATTCAGATGCTC-ATAAAAACAAATCCTTATATCCAATGTGGCTGACAATTGGTT
194 TCGAAACAAGATTGAGATGCTCGA-AAAAACAAATCCTTATATCCAATATGGCTGA-GATTTGTT
* * * *
28440 CGATAAATATAGATATTTCAAGAAGTCTTTGTACCAAAAATCATGCAAAATTGAGCCGGGGCTCC
257 CGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCC
28505 GG
322 GG
* * * ** * *
28507 AACACGTTTTTA-GCAAAAAACAATGATGTTAGTACACGATTTTGGCTAAAAACTTACCCAGAAA
1 AACGCGTTTTTACCCCAAAAACCGTGATGTTAGTACACGATTTCGGCTAAAAACTGACCC-GAAA
* * * *
28571 GTTTTTTTTCTCAATTTTTTGCCACAATAAT-AAAAAAAACATATAATTCAAAGCCAAAAAGATT
65 G-TTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATT
* * * *
28635 GATGGGTTTTTCACGCTTCTAATATCGTTTTTTTTTATTCTTTTTCTGAATTAATTTCTAATTAA
129 GACGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTTATT-TTTTTCCGAATTAATTTCTAATTAA
* * * *
28700 ATCGAAACAAAGATTCAGATGCTCGTAAAAACAAATCTTTATATCCAATGTGGCTGAGATTTGGT
193 ATCGAAAC-AAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTT-GT
* *
28765 TCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGTAAAATTGAGTCGGGGCTC
256 TCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTC
28830 CGG
321 CGG
* ** * * *
28833 AACGCCTTTTTA-GACAAAAACTGTGATGGTTAGTACACGATTTCGGGTAAAAACTGATCCGAAA
1 AACGCGTTTTTACCCCAAAAACCGTGAT-GTTAGTACACGATTTCGGCTAAAAACTGACCCG-AA
* * *
28897 AGTTTTGTTTTTCTCAATTTTTTGCCACAGTA-TTA-AAAAAA-A-ATAATTCAATGCCAAAAAA
64 AG--TT-TTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAG
* * ** *
28958 ATTGACGGGCTTTTCAAGTTTCTAATATCGTTTTTCTCAATATTTTT-CGAATTAATTTCTAATT
126 ATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTTATTTTTTTCCGAATTAATTTCTAATT
*
29022 AAATCGAAACAAGATTGAGATGTTC-AAAAAACAAATCCTTATATCCAATATGGCTGAGATTTAG
191 AAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTT-G
* * * * * *
29086 TTTGATGAATATAGATATTTCATGGAGTCTTTCTGCCAAAAATCATACGAAATTGTGCTGGGGCT
255 TTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCT
*
29151 CCCAG
320 -CCGG
* * *
29156 AACGTGTTTTTACCCTAAAAACC--G-TG---GTACACGATTTCGGCTGAAAACTGACCCGAAAA
1 AACGCGTTTTTACCCCAAAAACCGTGATGTTAGTACACGATTTCGGCTAAAAACTGACCCG-AAA
* *
29215 G-TTTTTTCTCAATTTTTTGCCACAGTACTCGGAAAAAATATATAATTCAAAT-CCAAAAAGATT
65 GTTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC-AATGCCAAAAAGATT
* * *
29278 GACGGGCTTTCCAAGCTTGTAATATCGTTTTTTCATT-TTTTTTTCCGAATTAATTTCTAATTAA
129 GACGGGCTTTTCAAGCTTCTAATATCGTTTTTT-TTTATTTTTTTCCGAATTAATTTCTAATTAA
* * *
29342 ATCGAAACAAGATTAAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGCCTGAGACTTTGT
193 ATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAATATGGCTGAGA-TTTGT
* * *
29407 TCGATGAATATAGATATTTCAAGGAGTATTTCTGCCAAACATCATGCGAAATTGAGCCGGGGCTC
256 TCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCT-
29472 CCGG
320 CCGG
* * * *
29476 AACGCGTTTTTATCCCAAAAACCGTGATAGTTAGTACACGATTTAGGCTGAAAATTGACCC-AAA
1 AACGCGTTTTTACCCCAAAAACCGTGAT-GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAA
*
29540 ATGTTTTTTCTCAATTTTTTTGCCACAATACTC-GAGAAAAATATATAATTCAATGCCAAAAAGA
65 GT-TTTTTTCTCAA-TTTTTTGCCACAATACTCAGA-AAAAATATATAATTCAATGCCAAAAAGA
* * *
29604 TTGACGGGCTTTCCAAGCTTGTAATATCGTTTTTTCATT-TTTTTTTCCGAATTAATTTCTAATT
127 TTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTT-TTTATTTTTTTCCGAATTAATTTCTAATT
* *
29668 AAATCGAAACAAGATTGAAATGCTCGAAAAAAAGAAATCCTTATATCC-ATAATGGCTGAGACTT
191 AAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAAT-ATGGCTGAGA-TT
* * * **
29732 TGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATTCAAAACTGAGCCGGAT
253 TGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGG
*
29797 CTCCCGA
318 CT-CCGG
* * * ** * * ** *
29804 AACACGTTTTAATCCCAAAAACCGTGATGGAACGTAAATGATTTCGGCTAAATGCTGACCCAAAA
1 AACGCGTTTTTACCCCAAAAACCGTGATGTTA-GTACACGATTTCGGCTAAAAACTGACCCGAAA
* * ** * * * * * * *
29869 TTTTTTTTTTCTCAATTTTTCGCCTTAAAACTTAGAAAAAATATTTAACTCAACGTCAAAAACAT
65 --GTTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGAT
* * * *
29934 TGATGGGCTTTTCATGCTTCTAATATCG---TTTTTTATTCTTTTTCTGAATTAAATTCTAATTA
128 TGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTTATT-TTTTTCCGAATTAATTTCTAATTA
* * ** * * * *
29996 AATCGAAACAAGATTCAGATACTCGTGAAAACAAATCCTTATATCCAATGTGGTTTACATTTGGT
192 AATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTT-GT
* * *
30061 TCGATGAATATACATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCTGGGACTC
256 TCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTC
30126 CGG
321 CGG
** * * * *
30129 AACGCGTTTTTA-GGCAAAAACTGTGATGGTAAGTACACGATTTCGGTTAAAAACTGACCTGAAA
1 AACGCGTTTTTACCCCAAAAACCGTGAT-GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAA
*
30193 GGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTG
65 GTTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTG
* * * *
30258 ACGGGCTTTTCAAGTTTCTAATATCG-TTTTTTTCATTTTTTTTCGAATTTATTTCTAATTAAAT
130 ACGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTTATTTTTTTCCGAATTAATTTCTAATTAAAT
*
30322 CGAAACAAGATTGAGATGTTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTAGTTCG
195 CGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTT-GTTCG
* * *
30387 ATGAATATAGATATTCCAAGGAGTCTTTCTGCCAAAAATCATGCGAAATTGAGACGGGGCTCCCG
259 ATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCT-CCG
30452 G
323 G
* * * * ** *
30453 AACGCGTTTGTACTCCAAAAACCGTAACG-TA-T--ACGATTTCGGCCGAAAACTGACCCCAAAA
1 AACGCGTTTTTACCCCAAAAACCGTGATGTTAGTACACGATTTCGGCTAAAAACTGA-CCCGAAA
30514 GTTTTTTTTCTCAA-TTTTTGCCACAATACTCAGAAAAAATATATAATT
65 G-TTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
30562 TCAA
Statistics
Matches: 2886, Mismatches: 376, Indels: 189
0.84 0.11 0.05
Matches are distributed among these distances:
313 25 0.01
314 2 0.00
315 6 0.00
316 1 0.00
317 83 0.03
318 43 0.01
319 99 0.03
320 204 0.07
321 300 0.10
322 309 0.11
323 286 0.10
324 134 0.05
325 172 0.06
326 317 0.11
327 131 0.05
328 282 0.10
329 195 0.07
330 20 0.01
331 112 0.04
332 15 0.01
333 18 0.01
334 106 0.04
335 26 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (323 bp):
AACGCGTTTTTACCCCAAAAACCGTGATGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAG
TTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGA
CGGGCTTTTCAAGCTTCTAATATCGTTTTTTTTTATTTTTTTCCGAATTAATTTCTAATTAAATC
GAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGTTCGAT
GAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGG
Done.