Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015180.1 Corchorus capsularis cultivar CVL-1 contig15201, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2740
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Found at i:602 original size:322 final size:323
Alignment explanation
Indices: 1--2734 Score: 3199
Period size: 322 Copynumber: 8.5 Consensus size: 323
* *
1 TTTTTCCGAATAAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTT
* * *
66 ATATCCAAAATGGCTGAGACATTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAA
65 ATATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAA
* ** * * * *
131 ATCTTGTGAAATTGAGCCGGGGCTCTTGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAATA
130 ATCATGCAAAATTGAGCCAGGGCTC-CGAAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTA
* * * *** * *
196 CATGATTTCGACTGAAAACTGACTAAAAATTTTTTTCTCAATTTTTTGCCATAATACTCAGAAAA
194 CACGATTTCGGCTAAAAACTGACCCGAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAA
* * *
261 AATATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTGTAATATCGTTTTTTCTTTT
259 AATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTCTATT
*
326 TTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATTCTCGAAAAAA-AAATCCTT
1 TTTTT-CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTT
** * * * *
390 ATATCCAAAATGGCTGAGACTTTGTTCAATGAATATAGATACTTCAAGGAGTCTTTTTACCGAAA
65 ATATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAA
* * * * * * * *
455 ATCCTGCAAAATTGAGCAAGGGCGCCGAAACGTGTTTTTA-ACAAAAAACTGTGATGGTT-GTGC
130 ATCATGCAAAATTGAGCCAGGGCTCCGAAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTAC
* * * * *
518 AAC-ATTTCGGTTAAAAACTGACCCCAATATTTTTTTCTCAATTTTTTGCCATAGTACTCAGAAA
195 -ACGATTTCGGCTAAAAACTGACCCGAA-AGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAA
* * *
582 GAATATATAATTCAATGCCAAAAAGATTGACGGGCTTCCCAAGCTTGTAATATCG-TTTTTCTCA
258 AAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTCT-A
646 -T
322 TT
* * *
647 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTGAGATGTTC-TAAAAACAAATCCTTA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTA
* * *
711 TATCCAATATGGCTGAGAGTTAGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAA
66 TATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAA
* * * *
776 TCATGCGAAATTGAGCCAGGACTCCGAAACGCGTTTTTAGCCCAAAAACAGTGATGGTTAGTACA
131 TCATGCAAAATTGAGCCAGGGCTCCGAAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACA
* * * * *
841 CGATTTCGGCTGAAAACTGGCCGGAAAGGTTTTTTCTCTATTTTTTGCCACAATTCTCAGAAAAA
196 CGATTTCGGCTAAAAACTGACCCGAAA-GTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAA
* * * * *
906 ATATAAAATTCAATGCCAAAAACATTGACGGGCTTTTCAAGCTTCTAATATCATTTTTTTCAATT
260 ATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATC-GTTTTTTCTATT
*
971 TTTTTCCG----AATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTAA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTA
* *
1032 TATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAAA
66 TATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAA
* * * * *
1097 TCATACAAAATTGAGCCAGGACTCCGGAACACGTTTTTACCCCAAAAACAGTGATGGTTAGTACA
131 TCATGCAAAATTGAGCCAGGGCTCCGAAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACA
* * * * * * *
1162 CGATTTCGGCTGAAAACTGGCCGGAAAGGTTTTTTCTCTATTTTTTGCCACATTTCTCAGAATAA
196 CGATTTCGGCTAAAAACTGACCCGAAA-GTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAA
* * *
1227 ATATAAAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTTTTTCA
260 ATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTCTAT--
1292 T
323 T
* *
1293 TTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGATGCTCGAAAAAA-ACAATCCTA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACA-AATCCTT
* * * * *
1357 ATATCTAAAATGGCTGAGACTTTGTTTAATTAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAA
65 ATATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAA
* * * * *
1422 ATCATGCAAATTTGAG-TAGGGGCTCCTAGAATGCGTTTTTACCCCCAAAACCGTGATGGTTAGT
130 ATCATGCAAAATTGAGCCA-GGGCTCCGA-AACGCGTTTTTACCCCAAAAACCGTGATGGTTAGT
* * * * *
1486 ACACGATTTCGGCTGAAAACTGTCCCGAAAAG-TTTTACTCAATTTTTTTGTCACAATAATCAG-
193 ACACGATTTCGGCTAAAAACTGACCCG-AAAGTTTTTTCTCAA-TTTTTTGCCACAATACTCAGA
* * *
1549 AAATATATATAATTCAATGTCAAAACGATTGACGGG-TTTCCAAGCTTCTAATATCG-TTTTTC-
256 AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTCT
1611 ATT
321 ATT
* * ** *
1614 TTTTTCCTAATTAATTTATAATTAAAAAGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCAT
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTT
* * *
1679 ATATCCAAAATGGCTGAGACTTTGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTCCCAAGA
65 ATATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAA
* * * * *
1744 ATCATGCAAAATTGGGCCGGGGCTCCCGAAACACGTTTTTATCTCAAAAACCGTGATGGTTAGTA
130 ATCATGCAAAATTGAGCCAGGGCT-CCGAAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTA
* * * * * * * *
1809 CACGATTTTGGCTAAAAGCTTG-CCCGAAAAGATTTTTCTCAATTTCTCGCCATAATACTAATAA
194 CACGATTTCGGCTAAAAAC-TGACCCG-AAAGTTTTTTCTCAATTTTTTGCCACAATACT--CAG
* * * *
1873 AAAAAATATATAATTCAACGTCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTT-
255 AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTC
1937 TATT
320 TATT
** * * * *
1941 CTTTTTTTGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGATC-ATAAAAACAAGTCCT
1 -TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGA-AAAAACAAATCCT
* * * * * * * * * * *
2005 TAGATCCAATATGGCTGACAATTGGTTCGATAAATATAAATATTTCAAGAAGTCTTTGTACCAAA
64 TATATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAA
* * * * * * ** *
2070 AATAATGCAAAATTGAGTCGGGGCTTCGGAACGCATTTTTA-GGCAAAAACTGTGATGGTTAGTA
129 AATCATGCAAAATTGAGCCAGGGCTCCGAAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTA
* ** *
2134 CACGATTTCGGTTAAAAACTGACTTGAAAAGTTTTTTTCTCAATTTTTTGACACAATACTCAGGA
194 CACGATTTCGGCTAAAAACTGACCCG-AAAG-TTTTTTCTCAATTTTTTGCCACAATACTCA-GA
* * * *
2199 AAAAATATATAATCCAATGCCAAAAAGATTGACGAGCTTTTCACGCTTCTAATATCGTTTTTTC-
256 AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTCT
*
2263 ATA
321 ATT
* * * *
2266 TTTTTCCGAATTAATTTCTAAATAAATTGAAACAAGATTGAGATGCTTGAAAAAACAAATCATTA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTA
* * * * *
2331 TATCCAATATGGCTGA-AATTTGGTTCGATGAATATAGATAATTCAAAGAGT-TTGTGC-GCCAA
66 TATCCAAAATGGCTGAGACTTT-GTTTGATGAATATAGATATTTCAAGGAGTCTT-T-CTGCCAA
** ** * * * * * *
2393 AAATCAAACAAAATCAAGTCAGGGTTCCGGAACACGTTTTTA--GCAAAAATCTGTGAT-GTTAG
128 AAATCATGCAAAATTGAGCCAGGGCTCCGAAACGCGTTTTTACCCCAAAAA-CCGTGATGGTTAG
* *
2455 TACACGATTTCGGCTAAAAACTGTCCCGAAAGAGTTTTATCTCAATTTTTTGCCACAATACTCAG
192 TACACGATTTCGGCTAAAAACTGACCCG-AA-AGTTTTTTCTCAATTTTTTGCCACAATACTCAG
* *
2520 -AAAAATATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTGTAATATCGTTTTTT-
255 AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTC
2583 TCATT
320 T-ATT
* *
2588 TATTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTT
* * *
2653 ATATCTAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAA
65 ATATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAA
*
2718 ATTATGCAAAATTGAGC
130 ATCATGCAAAATTGAGC
2735 TGGGAG
Statistics
Matches: 2077, Mismatches: 278, Indels: 110
0.84 0.11 0.04
Matches are distributed among these distances:
319 5 0.00
320 179 0.09
321 403 0.19
322 417 0.20
323 173 0.08
324 252 0.12
325 172 0.08
326 266 0.13
327 168 0.08
328 42 0.02
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (323 bp):
TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTA
TATCCAAAATGGCTGAGACTTTGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAA
TCATGCAAAATTGAGCCAGGGCTCCGAAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACA
CGATTTCGGCTAAAAACTGACCCGAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAA
TATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTCTATT
Found at i:1667 original size:647 final size:643
Alignment explanation
Indices: 1--2734 Score: 3312
Period size: 647 Copynumber: 4.2 Consensus size: 643
*
1 TTTTTCCGAATAAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAAC-AATCCTA
*
66 ATATCCAAAATGGCTGAGACATTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAA
65 ATATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAA
* * * * * *
131 ATCTTGTGAAATTGAGCCGGGGCTCTTGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAATA
130 ATCATG-CAAATTGAGCAGGGGCTCCTAGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTA
* * * * * *
196 CATGATTTCGACTGAAAACTGACTAAAAATTTTTTTCTCAATTTTTTGCCATAATACTCAGAAAA
194 CACGATTTCGGCTGAAAACTGCCTGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAA
* **
261 AATATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTGTAATATCGTTTTTTCTTTT
259 AATATATAATTCAATGCCAAAAAGATTGAC-GGCTTTCCAAGCTTCTAATATCGTTTTTTCAATT
* *
326 TTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATTCTCGAAAAAA-AAATCCTT
323 TTTTT-CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTA
* * * * * *
390 ATATCCAAAATGGCTGAGACTTTGTTCAATGAATATAGATACTTCAAGGAGTCTTTTTACCGAAA
387 ATATCCAAAATGGCTGAGACTTTGTTCGATGAATATAGAAATTTCAAGGAGTCTTTCTGCCAAAA
* * * * ** * * *
455 ATCCTGCAAAATTGAGCAAGGGCGCCGAAACGTGTTTTTAACAAAAAACTGTGATGGTT-GTGCA
452 ATCATACAAAATTGAGCCAGGGCTCCGAAACACGTTTTTACCCAAAAACTGTGATGGTTAGTAC-
* * * * * *
519 AC-ATTTCGGTTAAAAACTGACCCCAATA-TTTTTTTCTCAATTTTTTGCCATAGTACTCAGAAA
516 ACGATTTCGGCTAAAAACTGGCCCGAA-AGGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAA
* * *
582 GAATATATAATTCAATGCCAAAAAGATTGACGGGCTTCCCAAGCTTGTAATATCGTTTTTCTCAT
580 -AATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTTCAT
* * * * *
647 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTGAGATGTTCTAAAAACA-AATCCTTA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAATCCTAA
* * * * *
711 TATCCAATATGGCTGAGAGTTAGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAA
66 TATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAAA
* * * *
776 TCATGCGAAATTGAGCCA-GGACTCCGA-AACGCGTTTTTAGCCCAAAAACAGTGATGGTTAGTA
131 TCATGC-AAATTGAG-CAGGGGCTCCTAGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTA
* * * *
839 CACGATTTCGGCTGAAAACTGGCCGGAAAGGTTTTTTCTCTATTTTTTGCCACAATTCTCAGAAA
194 CACGATTTCGGCTGAAAACT-GCCTGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAA
* * * *
904 AAATATAAAATTCAATGCCAAAAACATTGACGGGCTTTTCAAGCTTCTAATATCATTTTTTTCAA
258 AAATATATAATTCAATGCCAAAAAGATTGAC-GGCTTTCCAAGCTTCTAATATC-GTTTTTTCAA
969 TTTTTTTCCG----AATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCT
321 TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCT
* *
1030 AATATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAA
386 AATATCCAAAATGGCTGAGACTTTGTTCGATGAATATAGAAATTTCAAGGAGTCTTTCTGCCAAA
* * *
1095 AATCATACAAAATTGAGCCAGGACTCCGGAACACGTTTTTACCCCAAAAACAGTGATGGTTAGTA
451 AATCATACAAAATTGAGCCAGGGCTCCGAAACACGTTTTTA-CCCAAAAACTGTGATGGTTAGTA
* * * * *
1160 CACGATTTCGGCTGAAAACTGGCCGGAAAGGTTTTTTCTCTATTTTTTGCCACATTTCTCAGAAT
515 CACGATTTCGGCTAAAAACTGGCCCGAAAGGTTTTTTCTCAATTTTTTGCCACAATACTCAGAA-
*
1225 AAATATAAAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTTTTT
579 AAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCG---TTTTTTT
1290 CAT
641 CAT
*
1293 TTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGATGCTCGAAAAAAACAATCCTAA
1 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAATCCTAA
* * *
1358 TATCTAAAATGGCTGAGACTTTGTTTAATTAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAAA
66 TATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAAA
* * *
1423 TCATGCAAATTTGAGTAGGGGCTCCTAGAATGCGTTTTTACCCCCAAAACCGTGATGGTTAGTAC
131 TCATGCAAA-TTGAGCAGGGGCTCCTAGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTAC
* * * *
1488 ACGATTTCGGCTGAAAACTGTCCCGAAAAG-TTTTACTCAATTTTTTTGTCACAATAATCAG-AA
195 ACGATTTCGGCTGAAAACTG-CCTGAAAAGTTTTTTCTCAA-TTTTTTGCCACAATACTCAGAAA
* * * *
1551 ATATATATAATTCAATGTCAAAACGATTGACGGGTTTCCAAGCTTCTAATATCG-TTTTTC-ATT
258 AAATATATAATTCAATGCCAAAAAGATTGACGGCTTTCCAAGCTTCTAATATCGTTTTTTCAATT
* * **
1614 TTTTTCCTAATTAATTTATAATTAAAAAGAAACAAGATTGAGATGCTCGAAAAAAACAAATCC-A
323 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTA
* * *
1678 TATATCCAAAATGGCTGAGACTTTGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTCCCAAG
387 -ATATCCAAAATGGCTGAGACTTTGTTCGATGAATATAGAAATTTCAAGGAGTCTTTCTGCCAAA
* * * * *
1743 AATCATGCAAAATTGGGCCGGGGCTCCCGAAACACGTTTTTATCTCAAAAACCGTGATGGTTAGT
451 AATCATACAAAATTGAGCCAGGGCT-CCGAAACACGTTTTTA-CCCAAAAACTGTGATGGTTAGT
* * * * * * * * *
1808 ACACGATTTTGGCTAAAAGCTTGCCCGAAAAGATTTTTCTCAATTTCTCGCCATAATACTAATAA
514 ACACGATTTCGGCTAAAAACTGGCCCGAAAGGTTTTTTCTCAATTTTTTGCCACAATAC---TCA
* * * * *
1873 AAAAAATATATAATTCAACGTCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTTT
576 GAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTT
1938 -ATT
641 CA-T
** * * * *
1941 CTTTTTTTGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGATC-ATAAAAACAAGTCCT
1 -TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAA-TCCT
* * * * * * * * * * * *
2005 TAGATCCAATATGGCTGACAATTGGTTCGATAAATATA-AATATTTCAAGAAGTCTTTGTACCAA
64 AATATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAA-ATTTCAAGGAGTCTTTCTGCCAA
* * * * ** *
2069 AAATAATGCAAAATTGAGTC-GGGGCTTC-GGAACGCATTTTTA-GGCAAAAACTGTGATGGTTA
128 AAATCATGC-AAATTGAG-CAGGGGCTCCTAGAACGCGTTTTTACCCCAAAAACCGTGATGGTTA
* * * *
2131 GTACACGATTTCGGTTAAAAACTGACTTGAAAAGTTTTTTTCTCAATTTTTTGACACAATACTCA
191 GTACACGATTTCGGCTGAAAACTG-CCTGAAAAG-TTTTTTCTCAATTTTTTGCCACAATACTCA
* * *
2196 GGAAAAAATATATAATCCAATGCCAAAAAGATTGACGAGCTTTTCACGCTTCTAATATCGTTTTT
254 -GAAAAAATATATAATTCAATGCCAAAAAGATTGACG-GCTTTCCAAGCTTCTAATATCGTTTTT
* * * *
2261 TC-ATATTTTTCCGAATTAATTTCTAAATAAATTGAAACAAGATTGAGATGCTTGAAAAAACAAA
317 TCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAA
* * * * *
2325 TCATTATATCCAATATGGCTGA-AATTTGGTTCGATGAATATAGATAA-TTCAAAGAGT-TTGTG
382 TCCTAATATCCAAAATGGCTGAGACTTT-GTTCGATGAATATAGA-AATTTCAAGGAGTCTT-T-
* ** * * * *
2387 C-GCCAAAAATCAAACAAAATCAAGTCAGGGTTCCGGAACACGTTTTTA-GCAAAAATCTGTGAT
443 CTGCCAAAAATCATACAAAATTGAGCCAGGGCTCCGAAACACGTTTTTACCCAAAAA-CTGTGAT
* *
2450 -GTTAGTACACGATTTCGGCTAAAAACTGTCCCGAAAGAGTTTTATCTCAATTTTTTGCCACAAT
507 GGTTAGTACACGATTTCGGCTAAAAACTGGCCCGAAAG-GTTTTTTCTCAATTTTTTGCCACAAT
* *
2514 ACTCAGAAAAATATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTGTAATATCGTT
571 ACTCAGAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTT
2579 TTTTTCAT
636 TTTTTCAT
2587 TTATTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCT
1 TT-TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAAC-AATCCT
*
2652 AATATCTAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAA
64 AATATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAA
*
2717 AATTATGCAAAATTGAGC
129 AATCATGC-AAATTGAGC
2735 TGGGAG
Statistics
Matches: 1776, Mismatches: 259, Indels: 106
0.83 0.12 0.05
Matches are distributed among these distances:
640 42 0.02
641 96 0.05
642 19 0.01
643 163 0.09
644 178 0.10
645 17 0.01
646 238 0.13
647 277 0.16
648 258 0.15
649 233 0.13
650 54 0.03
651 144 0.08
652 57 0.03
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (643 bp):
TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAATCCTAA
TATCCAAAATGGCTGAGACTTTGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCTGCCAAAAA
TCATGCAAATTGAGCAGGGGCTCCTAGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACA
CGATTTCGGCTGAAAACTGCCTGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAA
TATATAATTCAATGCCAAAAAGATTGACGGCTTTCCAAGCTTCTAATATCGTTTTTTCAATTTTT
TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTAATAT
CCAAAATGGCTGAGACTTTGTTCGATGAATATAGAAATTTCAAGGAGTCTTTCTGCCAAAAATCA
TACAAAATTGAGCCAGGGCTCCGAAACACGTTTTTACCCAAAAACTGTGATGGTTAGTACACGAT
TTCGGCTAAAAACTGGCCCGAAAGGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAATATA
TAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGTTTTTTTCAT
Done.