Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015183.1 Corchorus capsularis cultivar CVL-1 contig15204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12491
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.32
Found at i:1053 original size:264 final size:265
Alignment explanation
Indices: 532--1057 Score: 796
Period size: 264 Copynumber: 2.0 Consensus size: 265
522 GGTAACGTAC
*
532 ACGATTTCGGTTAAAAACTAACCCGAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAAAAAAA
1 ACGATTTCGGCTAAAAACTAACCCGAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAAAAAAA
* ** * *
597 TATATAATTCAATGCCAAAAAGATTGACGGGCTTTTGAAGCTTTTAATATCGTTTTTCTCATTTT
66 TATATAATTCAATGCCAAAAACATTGACGGGCTTTCCAAGCTTATAATATCGTTTTTCTCATTTA
* *
662 TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGTTCAAAAAACAAATCCTTATAT
131 TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCAAAAAACAAATCCTAATAT
* * * * *
727 CCAATATGGTAGAGATTTAGTTTGATGAATATAGATATTTGAAGGAGTCTTTCTGCCAAAAATCA
196 CCAAAATGGTAGAGATTTAGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCGGCCAAAAATCA
792 TGTAA
261 TGTAA
**
797 ACGATTTCGGCTGCAAACT-ACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAA
1 ACGATTTCGGCTAAAAACTAACCCG-AAAGTTTTTTCTCAATTTTTTGCCACAATACTCA-AAAA
*
861 AATATATTATTCAATGCCAAAAACATTGACGGG-TTTCCAAGCTTATAATATCGTTTTT-TCATT
64 AATATATAATTCAATGCCAAAAACATTGACGGGCTTTCCAAGCTTATAATATCGTTTTTCTCATT
924 TATTT-CGAATTAATTTCTAATT-AATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTA
129 TATTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC--AAAAAACAAATCCTA
*
987 ATATCCAAAATGGCT-GAGACTTT-GTTTGATGAACATAGAAATTTCAAGGAGTCTTTCGGTCAA
192 ATATCCAAAATGG-TAGAGA-TTTAGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCGGCCAA
1050 AAATCATG
255 AAATCATG
1058 AAAAATTGAG
Statistics
Matches: 238, Mismatches: 17, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
262 23 0.10
263 17 0.07
264 87 0.37
265 76 0.32
266 35 0.15
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (265 bp):
ACGATTTCGGCTAAAAACTAACCCGAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAAAAAAA
TATATAATTCAATGCCAAAAACATTGACGGGCTTTCCAAGCTTATAATATCGTTTTTCTCATTTA
TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCAAAAAACAAATCCTAATAT
CCAAAATGGTAGAGATTTAGTTTGATGAACATAGAAATTTCAAGGAGTCTTTCGGCCAAAAATCA
TGTAA
Found at i:2263 original size:325 final size:321
Alignment explanation
Indices: 1418--3032 Score: 1996
Period size: 325 Copynumber: 5.0 Consensus size: 321
1408 AACACGTTTT
*
1418 TACACGATTTCGGCTAAAAACTTG-CCCGAAAAGATTTTTCTCAATCTTTTGCCATAATACTCAG
1 TACACGATTTCGGCTAAAAAC-TGACCCGAAAAGATTTTTCTCAAT-TTTTGCCACAATACTCAG
* * * * * * *
1482 AAAAAAATATATAATTCAACGTCAAAAAAATTGACGTGCTTCTCACGCTTCTAATATCATTTTTT
64 -AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTT
* * *
1547 CAATTTTTTCTGAATTAATTTCTAAATAAATCGATACAAGATTCAGATGCTC-ATAAAAACAAAT
128 CAATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGA-AAAAACAAAT
* * * * * * * *
1611 CCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATCTCAAGAAGTCTCTGTACC
192 CCTTATATCCAATATGGCTGAGAATTAGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCC
* * * ** * *
1676 AAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAGGCAAAAACTGTGATGTTTAG
257 AAAAATCATGCAAAATTGAGCCGGGGCTCCGAAACACGTTTTTACCCAAAAACCGTGATGGTTAG
* * ** *
1741 AACACGATTTCGGTTAAAAACTGACCCG-AAATTTTTTTCTCAATTTTTTCCCACAATACTC---
1 TACACGATTTCGGCTAAAAACTGACCCGAAAAGATTTTTCTCAA-TTTTTGCCACAATACTCAGA
* * * *
1802 AAAAATATATAAGTCAATGCCAAAAAGATCGACAGGCTTTTCAGGCTTCTAATATCGTTTTTCTC
65 AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTT-TC
* *
1867 ATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATC
129 A-ATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATC
* *
1932 CTTATATCCAATATGGCTGAGATTTAGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCA
193 CTTATATCCAATATGGCTGAGAATTAGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCCA
* *
1997 AAAATCATGCAAAATTGAGCCGGGGCTGCCGAAAAATGTTTTTATCCCCAAAAACCGTGATGGTT
258 AAAATCATGCAAAATTGAGCCGGGGCT-CCGAAACACGTTTTTA--CCCAAAAACCGTGATGGTT
2062 AG
320 AG
* * * *
2064 TCCACGATTTCGGCTAAAAACTTG-CCCGAAAAGATTTTTCTCTATTTTTCGACATAATACTCAG
1 TACACGATTTCGGCTAAAAAC-TGACCCGAAAAGATTTTTCTCAATTTTT-GCCACAATACTCAG
* * * *
2128 AAAAAATATATAATTCAACGTCAAAAAGATTGACGGGCTTTTTACGCTTCTAATATCGTTTTTTC
64 AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTC
* * * *
2193 AATCTTTTATGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTC-ATAAAAACAAATC
129 AATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGA-AAAAACAAATC
* * * * * *
2257 CTTATATCCAATGTGGCTGATAATTGGTTCGATAAATATAGATATTTCAAGAAGTCTTTGTACCA
193 CTTATATCCAATATGGCTGAGAATTAGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCCA
* * ** * ** *
2322 AAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCAG-TTTTAGGCAAAGATTGTAATGGTTAG
258 AAAATCATGCAAAATTGAGCCGGGGCTCCGAAACAC-GTTTTTACCCAAAAACCGTGATGGTTAG
* **
2386 TACACGAATTCGTTTAAAAACTGACCCGAAAA-ATTTTTCTCAATTATTTGCCACAATACTCAGA
1 TACACGATTTCGGCTAAAAACTGACCCGAAAAGATTTTTCTCAATT-TTTGCCACAATACTCAGA
* **
2450 AAAAATATATAATTTAATGCCAAAAAGATTGACGGGC-TTTCAAAGCTTGGAATATCGTTTTTCT
65 AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTC-AAGCTTCTAATATCGTTTTT-T
* *
2514 CATTTTTTTCTGAATTAATTTTTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATC
128 CAATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATC
* * *
2579 CTTATATCCAATATGGCTGAGACTTAGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGCCA
193 CTTATATCCAATATGGCTGAGAATTAGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCCA
* * * *
2644 AAAATCATGCGAAATTGAGCTGGGGCTCCTGGAACCCGTTTTTACCCCAAAAACCGTGATGGTTA
258 AAAATCATGCAAAATTGAGCCGGGGCTCC-GAAACACGTTTTTA-CCCAAAAACCGTGATGGTTA
2709 G
321 G
* * * *
2710 TACACGATTTCGGCTGAAAACTGTCACGAAAAG-TTGTTTCTCAATTTTTTACCACAATACTCAG
1 TACACGATTTCGGCTAAAAACTGACCCGAAAAGATT-TTTCTCAA-TTTTTGCCACAATACTCAG
* * * *
2774 AAAAATTATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTCTAATATTGTTTTTTC
64 AAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTC
* * * *
2839 ATTTTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGTTGCTCGAAAGAAACAAAT
129 A-ATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAA-AAACAAAT
* * * * * *
2904 CCTTATATCCAAAATGACTGAGACTTTGTTCGATTAATACAGATATTTCAAGGAGTCTTTCTGCC
192 CCTTATATCCAATATGGCTGAGAATTAGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCC
* *
2969 AAAAATCATGCAAAATTGAGCCGGGGCTCCCGAAACACG-TTTCATCACAAAAACCGTGATGGTT
257 AAAAATCATGCAAAATTGAGCCGGGGCT-CCGAAACACGTTTTTA-CCCAAAAACCGTGATGGTT
3033 TTTCAATTTT
Statistics
Matches: 1112, Mismatches: 149, Indels: 60
0.84 0.11 0.05
Matches are distributed among these distances:
318 52 0.05
319 3 0.00
320 141 0.13
321 90 0.08
322 214 0.19
323 80 0.07
324 80 0.07
325 288 0.26
326 107 0.10
327 57 0.05
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (321 bp):
TACACGATTTCGGCTAAAAACTGACCCGAAAAGATTTTTCTCAATTTTTGCCACAATACTCAGAA
AAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCAA
TTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTT
ATATCCAATATGGCTGAGAATTAGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAA
ATCATGCAAAATTGAGCCGGGGCTCCGAAACACGTTTTTACCCAAAAACCGTGATGGTTAG
Found at i:3177 original size:196 final size:198
Alignment explanation
Indices: 2833--3192 Score: 528
Period size: 196 Copynumber: 1.8 Consensus size: 198
2823 CTAATATTGT
* * * * *
2833 TTTTTCATTTTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGTTGCTCGAAAGAA
1 TTTTTCATATTTTTTCAGAATTAATTTCTAAATAAATAGAAACAAGATTCAGATGCTCGAAAGAA
* * * * *
2898 ACAAATCCTTATATCCAAAATGACTGAGACTTTGTTCGATTAATACAGATATTTCAAGGAGTCTT
66 ACAAATCCTTATATCCAAAATGACTGACAATTGGTTCGATAAATACAGATATTTCAAGAAGTCTT
*
2963 TCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGAAACACGTTTCATCACAAAAACCGTGA
131 TCTACCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGAAACACGTTTCATCACAAAAACCGTGA
3028 TGG
196 TGG
* *
3031 TTTTTCA-ATTTTTTCAGAATTAATTTCTAAATAAATCGAAACCAGATTCAGATGCTC-ATAA-A
1 TTTTTCATATTTTTTCAGAATTAATTTCTAAATAAATAGAAACAAGATTCAGATGCTCGA-AAGA
** * *
3093 AACAAATCCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATTTCAAGAAGTCT
65 AACAAATCCTTATATCCAAAATGACTGACAATTGGTTCGATAAATACAGATATTTCAAGAAGTCT
*
3158 TTGTACCAAAAATCATGCAAAATTGAGCCGGGGCT
130 TTCTACCAAAAATCATGCAAAATTGAGCCGGGGCT
3193 TCGGAACGAA
Statistics
Matches: 143, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
196 91 0.64
197 45 0.31
198 7 0.05
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (198 bp):
TTTTTCATATTTTTTCAGAATTAATTTCTAAATAAATAGAAACAAGATTCAGATGCTCGAAAGAA
ACAAATCCTTATATCCAAAATGACTGACAATTGGTTCGATAAATACAGATATTTCAAGAAGTCTT
TCTACCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGAAACACGTTTCATCACAAAAACCGTGA
TGG
Found at i:3638 original size:324 final size:321
Alignment explanation
Indices: 3031--5195 Score: 2789
Period size: 324 Copynumber: 6.7 Consensus size: 321
3021 ACCGTGATGG
* * * * * *
3031 TTTTTCAATTTTTTCAGAATTAATTTCTAAATAAATCGAAACCAGATTCAGATGCTCATAAAAAC
1 TTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCAAAAAAAC
* * * * * * *
3096 AAATCCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATTTCAAGAAGTCTTTG
66 AAATCCTTATATCCAATATGGCTGA-GATTAGTTTGATGAATATAGATATTTCAAGGAGTCTTTC
* * ** ** *
3161 TACCAAAAATCATGCAAAATTGAGCCGGGGCT-TCGGAACGAATTTTTAGGCAAAAACTGTGATG
130 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTACCCAAAAACCGTGATG
* * * *
3225 GTTAGTATACGATTTCGGTTAAAAACTGACCTGAAATGTTTTTTCTCAATTTTTTGCCACAATAC
195 GTTAGTACACGATTTCGGTTGAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATAC
* * *
3290 TCAGAAAAA-ATAATTATGTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTATAATATCGGT
260 TCAGAAAAATAT-ATAAT-TCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTGTAATATC-GT
* * * *
3354 TTTCTCATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGTTC-CAAAAA
1 TTTTTCA-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCAAAAAAA
* *
3418 CAAATCCTTATATCCAATATGGCTGAGATTCAGTTTGATGAATATAGATATTTCAACGAGTCCTT
65 CAAATCCTTATATCCAATATGGCTGAGATT-AGTTTGATGAATATAGATATTTCAAGGAGTCTTT
* * *
3483 CTGCCAAAAATCATGCGAAATTGAGCCGAGGCTCCCGGAACGCGTTTTTAACCAAAAACCGTGAT
129 CTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTACCCAAAAACCGTGAT
* *
3548 GGTTAGTACACGATTTCGGCTGCAAACT-ACCCGAAAAGTTTTTTTCTCAATTTTTTGCCACAAT
194 GGTTAGTACACGATTTCGGTTGAAAACTGACCCGAAAAG-TTTTTTCTCAATTTTTTGCCACAAT
* * *
3612 ACTCAGAAAAAATATATAATTCAATGCCAAAAATATTGACGGGGTTTTCAAGCTTGTAATATCGT
258 ACTCAG-AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTGTAATATCGT
*
3677 TTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATTGAAACAAGATTGAGATGCTCGAAAAAAA
1 TTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC--AAAAAA
* * * * * * *
3742 ACAAATCCTAATATCCAAAATGGCCGAGACTTTGTTTGATGAACATAGAAATTTCAAGAAGTCTT
64 ACAAATCCTTATATCCAATATGGCTGAGA-TTAGTTTGATGAATATAGATATTTCAAGGAGTCTT
* * * * * *
3807 TCTGTCAAAAATCATGAAAAATTGAGCTGGGGCTCCTGGAACGCGTTTTTACCCCAAAAATCATG
128 TCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTA-CCCAAAAACCGTG
** *
3872 ATGGTTAGTACACGATTTCGGTTGAAAACTTTCCCGAAAAGTTTTTTCTCAATTTTTTACCACAA
192 ATGGTTAGTACACGATTTCGGTTGAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAA
* *
3937 TACTCAGAAAAATATATAATTCAATGCCAAAAACATTGGCGGGCTTTCCAAGCTTGTAATATCGT
257 TACTCAGAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTGTAATATCGT
* * *
4002 TTTTTCATTTTTTTCCCAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCACGAATAAAA
1 TTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC-AAAAAAA
* * * * * * *
4067 CAAATCCTAATATCCAAAATGTCTGACACTTAATTTGATGAACATAGAAATTTCAAGGAGTCTTT
65 CAAATCCTTATATCCAATATGGCTGAGA-TTAGTTTGATGAATATAGATATTTCAAGGAGTCTTT
* * ** ** * *
4132 CTGTCAAAAATCATGAAAAATTGAGTTGGGGCTCTTGGAACGCGTTTTTACCCCCAAAACCATGA
129 CTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTA-CCCAAAAACCGTGA
* * * * *
4197 TGGTTAGTACACGATATCGGTTGAAAACTGTCCTGAAAAATTTTTTCTCAAGTTTTTGCCACAAT
193 TGGTTAGTACACGATTTCGGTTGAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAAT
* * *
4262 ACTCAGGAAAATATAAAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTCTAATATCGT
258 ACTCAGAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTGTAATATCGT
* * * * *
4326 TTTTTCAATTTTTTCTGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCATAAAAAC
1 TTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCAAAAAAAC
* * * * * ** *
4391 AAATCCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATTTCAAAAAGTCTTTG
66 AAATCCTTATATCCAATATGGCTGA-GATTAGTTTGATGAATATAGATATTTCAAGGAGTCTTTC
* * * * * ** *
4456 TACCAAAAATCGTGCAAAATTGAGCCGAGGCT-TCGGAACGCATTTTTAGGCAAAAACTGTGATG
130 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTACCCAAAAACCGTGATG
* *
4520 GTTAGTACACGATTTAGGTT-AAAAGCTGACCCGAAAGGTTTTTTCTCAATTTTTTGCCACAATA
195 GTTAGTACACGATTTCGGTTGAAAA-CTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATA
* * * * *
4584 CTCAGAAAAAATATATAATTCATTGCCAAAAAGATTGACGGACTTTTCAAGCTTCTAATATCTT
259 CTCAG-AAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTGTAATATCGT
* *
4648 TTTTCTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGTTC-AAAAAA
1 TTTT-TCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCAAAAAAA
4712 CAAATCCTTATATCCAATATGGCTGAGATTTAGTTTGATGAATATAGATATTTCAAGGAGTCTTT
65 CAAATCCTTATATCCAATATGGCTGAGA-TTAGTTTGATGAATATAGATATTTCAAGGAGTCTTT
* * * * * *
4777 CTGCCAAAAATCATGCGAAATTGAGTCGGGGCTCCCGGAACACATTTTTAACCAAAAACCGTGAC
129 CTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTACCCAAAAACCGTGAT
* *
4842 GGTTAGTACACGATTTCGGCTGCAAACT-ACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATA
194 GGTTAGTACACGATTTCGGTTGAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATA
* *
4906 CTCAGGAAAATATATAATTCAATGCCAAAAATATTGACGGGCTTTCCAAGCTTGTAATATCGT
259 CTCAGAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTGTAATATCGT
* * *
4969 TTTTTCATTTTTTTTCCAAATTAATTTCTAATTAAATTGAAACAAGATTGAGATGCTCGAAAAAC
1 TTTTTCA-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC-AAAAAA
* * * *
5034 ACAAATCCTTATATCCAAAACGGCTGAGACTTTGTTCGATGAATATAGATATTTCAAGGAGTCTT
64 ACAAATCCTTATATCCAATATGGCTGAGA-TTAGTTTGATGAATATAGATATTTCAAGGAGTCTT
* * * * *
5099 TCTGCCAAAAATCATGCGAAATTAAGCCGGGACTCCGGGAACGCGTTTTTACCCCAAAAACCATG
128 TCTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTA-CCCAAAAACCGTG
* * *
5164 ATTGTTAGTACACGATTCCGGTTAAAAACTGA
192 ATGGTTAGTACACGATTTCGGTTGAAAACTGA
5196 ATTAAGATTC
Statistics
Matches: 1616, Mismatches: 202, Indels: 46
0.87 0.11 0.02
Matches are distributed among these distances:
320 7 0.00
321 170 0.11
322 248 0.15
323 392 0.24
324 498 0.31
325 220 0.14
326 72 0.04
327 9 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (321 bp):
TTTTTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCAAAAAAAC
AAATCCTTATATCCAATATGGCTGAGATTAGTTTGATGAATATAGATATTTCAAGGAGTCTTTCT
GCCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGGAACGCGTTTTTACCCAAAAACCGTGATGG
TTAGTACACGATTTCGGTTGAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACT
CAGAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCCAAGCTTGTAATATCGT
Found at i:3818 original size:844 final size:844
Alignment explanation
Indices: 2187--3842 Score: 2644
Period size: 844 Copynumber: 2.0 Consensus size: 844
2177 CTAATATCGT
2187 TTTTTCAATCTTTTATGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCATAAAAAC
1 TTTTTCAATCTTTTATGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCATAAAAAC
*
2252 AAATCCTTATATCCAATGTGGCTGATAATTGGTTCGATAAATATAGATATTTCAAGAAGTCTTTG
66 AAATCCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATTTCAAGAAGTCTTTG
* * *
2317 TACCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCAGTTTTAGGCAAAGATTGTAATGG
131 TACCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGAAGTTTTAGGCAAAAACTGTAATGG
*
2382 TTAGTACACGAATTCGTTTAAAAACTGACCCGAAAAATTTTTCTCAATTATTTGCCACAATACTC
196 TTAGTACACGAATTCGGTTAAAAACTGACCCGAAAAATTTTTCTCAATTATTTGCCACAATACTC
* * *
2447 AGAAAAAATATATAATTTAATGCCAAAAAGATTGACGGGCTTTCAAAGCTTGGAATATCGTTTTT
261 AGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCAAAGCTTAGAATATCGGTTTT
* * *
2512 CTCATTTTTTTCTGAATTAATTTTTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAA
326 CTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGAAAAAACAAA
* *
2577 TCCTTATATCCAATATGGCTGAGACTTAGTTTGATGAATATAGATATTTCAAGGAGTCTTTCTGC
391 TCCTTATATCCAATATGGCTGAGACTTAGTTTGATGAATATAGATATTTCAACGAGTCCTTCTGC
* * * *
2642 CAAAAATCATGCGAAATTGAGCTGGGGCTCCTGGAACCCGTTTTTACCCCAAAAACCGTGATGGT
456 CAAAAATCATGCGAAATTGAGCCGAGGCTCCCGGAACCCGTTTTTACACCAAAAACCGTGATGGT
*
2707 TAGTACACGATTTCGGCTGAAAACTGTCACGAAAAGTTGTTTCTCAATTTTTTACCACAATACTC
521 TAGTACACGATTTCGGCTGAAAACTGACACGAAAAGTTGTTTCTCAATTTTTTACCACAATACTC
* *
2772 AGAAAAATTATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTCTAATATTGTTTTT
586 AGAAAAAATATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTCTAATATCGTTTTT
* *
2837 TCATTTTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGTTGCTCGAAAGAAACAA
651 TCATTTTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGATGCTCGAAAAAAACAA
* * * * * *
2902 ATCCTTATATCCAAAATGACTGAGACTTTGTTCGATTAATACAGATATTTCAAGGAGTCTTTCTG
716 ATCCTAATATCCAAAATGACCGAGACTTTGTTCGATGAACACAGAAATTTCAAGAAGTCTTTCTG
*
2967 CCAAAAATCATGCAAAATTGAGCCGGGGCTCCCGAAACACGTTTCATCACAAAAACCGTGATGG
781 CCAAAAATCATGAAAAATTGAGCCGGGGCTCCCGAAACACGTTTCATCACAAAAACCGTGATGG
* *
3031 TTTTTCAATTTTTTCA-GAATTAATTTCTAAATAAATCGAAACCAGATTCAGATGCTCATAAAAA
1 TTTTTCAATCTTTT-ATGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCATAAAAA
3095 CAAATCCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATTTCAAGAAGTCTTT
65 CAAATCCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATTTCAAGAAGTCTTT
* * *
3160 GTACCAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGAATTTTTAGGCAAAAACTGTGATG
130 GTACCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGAAGTTTTAGGCAAAAACTGTAATG
* * * ** *
3225 GTTAGTATACGATTTCGGTTAAAAACTGACCTGAAATGTTTTTTCTCAATTTTTTGCCACAATAC
195 GTTAGTACACGAATTCGGTTAAAAACTGACCCGAAA-AATTTTTCTCAATTATTTGCCACAATAC
* *
3290 TCAGAAAAAATA-ATTATGTCAATGCCAAAAAGATTGACGGGCTTTTC-AAGCTTATAATATCGG
259 TCAGAAAAAATATATAAT-TCAATGCCAAAAAGATTGACGGGC-TTTCAAAGCTTAGAATATCGG
* *
3353 TTTTCTCATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGTTC-CAAAA
322 TTTTCTCA-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGAAAAA
3417 ACAAATCCTTATATCCAATATGGCTGAGA-TTCAGTTTGATGAATATAGATATTTCAACGAGTCC
386 ACAAATCCTTATATCCAATATGGCTGAGACTT-AGTTTGATGAATATAGATATTTCAACGAGTCC
*
3481 TTCTGCCAAAAATCATGCGAAATTGAGCCGAGGCTCCCGGAACGCGTTTTTA-ACCAAAAACCGT
450 TTCTGCCAAAAATCATGCGAAATTGAGCCGAGGCTCCCGGAACCCGTTTTTACACCAAAAACCGT
* * * *
3545 GATGGTTAGTACACGATTTCGGCTGCAAACT-ACCCGAAAAGTTTTTTTCTCAATTTTTTGCCAC
515 GATGGTTAGTACACGATTTCGGCTGAAAACTGACACGAAAAG-TTGTTTCTCAATTTTTTACCAC
* * * * *
3609 AATACTCAGAAAAAATATATAATTCAATGCCAAAAATATTGACGGGGTTTTCAAGCTTGTAATAT
579 AATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTCTAATAT
*
3674 CGTTTTTTCA-TTTTTTTCCGAATTAATTTCTAATTAAATTGAAACAAGATTGAGATGCTCGAAA
644 CGTTTTTTCATTTTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGATGCTCG-AA
* * *
3738 AAAAACAAATCCTAATATCCAAAATGGCCGAGACTTTGTTTGATGAACATAGAAATTTCAAGAAG
708 AAAAACAAATCCTAATATCCAAAATGACCGAGACTTTGTTCGATGAACACAGAAATTTCAAGAAG
* *
3803 TCTTTCTGTCAAAAATCATGAAAAATTGAGCTGGGGCTCC
773 TCTTTCTGCCAAAAATCATGAAAAATTGAGCCGGGGCTCC
3843 TGGAACGCGT
Statistics
Matches: 744, Mismatches: 60, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
843 57 0.08
844 444 0.60
845 193 0.26
846 50 0.07
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (844 bp):
TTTTTCAATCTTTTATGAATTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTCATAAAAAC
AAATCCTTATATCCAATGTGGCTGACAATTGGTTCGATAAATATAGATATTTCAAGAAGTCTTTG
TACCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGAAGTTTTAGGCAAAAACTGTAATGG
TTAGTACACGAATTCGGTTAAAAACTGACCCGAAAAATTTTTCTCAATTATTTGCCACAATACTC
AGAAAAAATATATAATTCAATGCCAAAAAGATTGACGGGCTTTCAAAGCTTAGAATATCGGTTTT
CTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGAAAAAACAAA
TCCTTATATCCAATATGGCTGAGACTTAGTTTGATGAATATAGATATTTCAACGAGTCCTTCTGC
CAAAAATCATGCGAAATTGAGCCGAGGCTCCCGGAACCCGTTTTTACACCAAAAACCGTGATGGT
TAGTACACGATTTCGGCTGAAAACTGACACGAAAAGTTGTTTCTCAATTTTTTACCACAATACTC
AGAAAAAATATATAATTCAATGCCAAAAAGATTGACAGGCTTTCCAAGCTTCTAATATCGTTTTT
TCATTTTTTTTCCGAATTAATTTCTAATTAAATAGAAACAAGATTGAGATGCTCGAAAAAAACAA
ATCCTAATATCCAAAATGACCGAGACTTTGTTCGATGAACACAGAAATTTCAAGAAGTCTTTCTG
CCAAAAATCATGAAAAATTGAGCCGGGGCTCCCGAAACACGTTTCATCACAAAAACCGTGATGG
Found at i:9555 original size:973 final size:969
Alignment explanation
Indices: 7646--10950 Score: 4374
Period size: 973 Copynumber: 3.4 Consensus size: 969
7636 AACTTGCTCA
* * * *
7646 AAAAGATTTTTCTCAATTTTTCGCCATAATACTCAGAAAAAATATATAATTCAACGTCAAAAAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGA
* * * * *
7711 TTGACAGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTTTCTGAATTAATTTCTAAATAAA
66 TTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
* * ** * * * *
7776 TCGAAACAAGATTCAGATGCTC-ATAAAAACAAATCCTTATATCCAATGTGGCTAACAGTTGGTT
131 TCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTTTGTT
* * *
7840 CGATAAATATAGATATTTCAAGAAGTCTTTTGTACCAAAAATCATGCAAACTTGAGCCGGGGCT-
196 CGATGAATATAGATATTTCAAGAAGTC-TTTCTACCAAAAATCATGCAAAATTGAGCCGGGGCTC
* *
7904 CCGGAACGCATTTTTA--GCAAAAACCCCGTGAT-GTTAGTACACGATTTTGGCTAAAAACTTAC
260 CCGGAACGCATTTTTACCCCAAAAA--CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTTAC
** * *
7966 CCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA-AAAAAACCATACAATTCAACAG-CAA
323 CCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAA-TGCCAA
* * * * * *
8029 AAACATTGATGGG-TTTTTCACGTTTCTAATATCGTTTTTTCATTCTTTTTCTGAATGAACTTCT
387 AAAGATTGACGGGCTTTTT-ACGCTTCTAATATCGTTTTTTCATTTTTTTTCTGAATTAATTTCT
* * * * *
8093 AATTAAATCAGAACAAGATTCAGGTGCTCGTAAAAACAAATCATTATATCCAATTTGGCTGAGAT
451 AATTAAATCA-AACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGAT
* * * *
8158 TTGGTTCGATAAATATAGATATTTTAAGGAGTCATTCTGCCAAAAATCATGCAAAATTGAGCTGG
515 TTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCGAAATTGAGCCGG
* * **** * * *
8223 GGCTCCGAAAGGCGTTTTTAGGAAAAAAAACTGTGATGGTTAGTACACGATTTCAGTTAAAAACT
580 GGCTCCGGAACGCGTTTTTA-CCCCAAAAACCGTGATTGTTAGTACACGATTTCGGTTAAAAACT
* ***
8288 GACCCAAAAAGTTTTT-TCAATTTTTTGCCATGGTACTCAGAAAAAATATATAATTCAATGCCAA
644 GACCCGAAAAGTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAA
* *
8352 AGAGATTGACGTGCTTTTCAAGCTTCT--TATCGTTTTTTTCATTTTTTTTCCGAATTAATTTCT
709 AAAGATTGACGTGCTTTTCAAGCTTCTAATATCATTTTTTTCATTTTTTTTCCGAATTAATTTCT
* * *
8415 AATTAAATCGAAACAAAATTGAGATGTTCGAAAAAACAAATCCTTAAATCCAATATGGCTGAGAT
774 AATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGAT
*
8480 TTAGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGC-GAAATTGAGTCG
839 TT-GTTCGATGAAAATAGATATTTCAA-GAGTCTTTCTGCCAAAAATCATGCAG-AATTGAGTCG
* * **
8544 GGGCTCCCGGAACGCGTTTTTAATCAAAAA-TCGTGATGGTTAGTACACGATTTCGGCTGCAAAC
901 GGGCT-CCGGAA-GCATTTTTAACCAAAAACT-GTGATGGTTAGTACACGATTTCGGCTAAAAAC
8608 TGACCCG
963 TGACCCG
* * * *
8615 AGAAGTTTTTTCTCAATTTTTTGCCATAATACTCAGAAAAAATATATAATTCAATGCCAAAAATA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGA
* *
8680 TTGACGGGCTTTCCAAGCTTGTAATATCGTTTTTTACATTTTTTTCCGAATTAATTTCTAATTAA
66 TTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTT-CATTTTTTTCCGAATTAATTTCTAATTAA
* * * * *
8745 ATCGAAACAAGATTGACATGTTCGAAAAAAACAAATCCTAACATCCAAAATTGCTGAGACTTTGT
130 ATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTTTGT
* * * * *
8810 TTGATGAACATAGATATTTCAAGGAGTCTTTCTACCAAAAATCATGCAAAATTAAGCTGGGGCTC
195 TCGATGAATATAGATATTTCAAGAAGTCTTTCTACCAAAAATCATGCAAAATTGAGCCGGGGCTC
* * * *
8875 CAGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTTCACGATTTCGGCTGAAAACTGT-CC
260 CCGGAACGCATTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT-TACC
* *
8939 CGAAAAGTTTTTTCTCAATTTTTTGCCACAGTACTCAGAAAAAATTATATAATTCAATGCCAAAA
324 CGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAATGCCAAAA
* *
9004 AGATTGACGGGCTTTTTACGCTTCTAATATCG-TTTTTCTTTTTTTTTCTGAATTAATTTCCAAT
389 AGATTGACGGGCTTTTTACGCTTCTAATATCGTTTTTTCATTTTTTTTCTGAATTAATTTCTAAT
*
9068 TAAATCGAAACAAGATTGAGATGCTCGAAAAACACAAATCCTTATATCCAAAATGGCTGAGACTT
454 TAAATC-AAACAAGATTGAGATGCTCGAAAAA-ACAAATCCTTATATCCAATATGGCTGAGA-TT
* ** * *
9133 T-CTTCGACGAACATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCGAAATTAAGCCGGG
516 TGGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCGAAATTGAGCCGGG
* * *
9197 ACTCCGGGAACGCGTTTTTACCCCAAAAACCATGATTGTTAGTACACGATTCCGGTTAAAAACTG
581 GCTCC-GGAACGCGTTTTTACCCCAAAAACCGTGATTGTTAGTACACGATTTCGGTTAAAAACTG
* * * * *
9262 ACCCGAAATGTTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATATAATTTAACGCTAAA
645 ACCCGAAAAGTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAA
9327 AAGA-TGTACGTG-TTTTCAAGCTTCTAATATCATTTTTTTCATTTTTTTTCCCGAA-TAATTTC
710 AAGATTG-ACGTGCTTTTCAAGCTTCTAATATCATTTTTTTCATTTTTTTT-CCGAATTAATTTC
* * * * * * * *
9389 CAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAAGAAATCCTTATATCCAATGTGGTTGACA
773 TAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGA
*
9454 TTTGGTTCGATGAATATAGATATTTCAAGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGTCGG
838 TTT-GTTCGATGAAAATAGATATTTCAAGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGTCGG
* * ** *
9519 GGCTTCGGATGGCATTTTTAGGCAAAAACTGTGATGGTTAGTACACGATTTCGACTAAAAACTGA
902 GGCTCCGGA-AGCATTTTTAACCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
9584 CCCG
966 CCCG
* * *
9588 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGCAAAAGTATATAATTCAATGCCAAAAAAG
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCC-AAAAAG
* *
9653 ATTGACGGGCTTTTCAAGCTTCTCATATTGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAA
65 ATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAA
* * * *
9718 ATCGAAACAAAATTGAGATGTTCGAAAAGAACAAATCCTTATATCCAATATGGCTGAGA-TTTGT
130 ATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTTTG-
* * * * * * *
9782 TTCGATTAATATAGATATTTCAAGAAGTCTTTTTGCCAAAAATCATACGAATTTGA-CCAAGGGC
194 TTCGATGAATATAGATATTTCAAGAAGTCTTTCTACCAAAAATCATGCAAAATTGAGCC-GGGGC
* * *
9846 TCCCGGAACGCGTTTTTACCCCTAAAACCGTGACGGTTAGTACACGATTTCGGCTAAAAACTTAC
258 TCCCGGAACGCATTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTTAC
* *
9911 CCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAG-AGAAAGTATATAATTCAATGCCAAA
323 CCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAATGCCAAA
* * *
9975 AAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCCA-TTTTTTTCCGAATTAATTTCTA
388 AAGATTGACGGGCTTTTTACGCTTCTAATATCGTTTTTT-CATTTTTTTTCTGAATTAATTTCTA
* * *
10039 ATTAAATCAAAACAAAATTGAGATGTTCGAAAAGAACAAATCCTTATATCCAATATGGTTGAGAT
452 ATTAAATC-AAACAAGATTGAGATGCTCGAAAA-AACAAATCCTTATATCCAATATGGCTGAGAT
* * * *
10104 TTGGTTCGATTAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATACGAATTTGAGCCGG
515 TTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCGAAATTGAGCCGG
* *
10169 GGCTCCTGGAACGCGTTTTTACCCCTAAAACCGTGA-TG---GTACACGATTTCGGCTAAAAACT
580 GGCTCC-GGAACGCGTTTTTACCCCAAAAACCGTGATTGTTAGTACACGATTTCGGTTAAAAACT
*
10230 TACCCGAAAAGTTTTTTCTCAA-TTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCA
644 GACCCGAAAAG-TTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCA
* *
10294 AAAAGATTGACGGGTTTTTCAAGCTTCTAATATCA-TTTTTTCA-TTTTTTTCCGAATTAATTTC
708 AAAAGATTGACGTGCTTTTCAAGCTTCTAATATCATTTTTTTCATTTTTTTTCCGAATTAATTTC
*
10357 TAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCC-ATAATAGCTGA
773 TAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAAT-ATGGCTGA
* * * * *
10421 GACTTTGTTCGATGAACATAAATATTTCAAAGAGTCTTTCAGCCAAAAATCATGCAAAACTGAGT
836 GA-TTTGTTCGATGAAAATAGATATTTC-AAGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGT
* * * * *
10486 CGGGACTCCCGAAACACGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
899 CGGGGCTCCGGAAGCA--TTTTTA-ACCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAA
10551 ACTGACCCG
961 ACTGACCCG
* *
10560 AAAAGTTTCTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAACGCCAAAAAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGA
* * * *
10625 TTGATGGGTTTTTCAAACTTCTAATATCGTTTTTTCA-TTTTTTCCGAATTAATTTTTAATTAAA
66 TTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
*
10689 TCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTATGTT
131 TCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTTTGTT
* * * * *
10754 CGATGAATATAAATATTTCAAGGAGTCTTTCTCCCAAAAATCATGCAAAACTGAGCCGAGGCTCC
196 CGATGAATATAGATATTTCAAGAAGTCTTTCTACCAAAAATCATGCAAAATTGAGCCGGGGCTCC
* *
10819 CGAAACACATTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT-AAAACTTACCCG
261 CGGAACGCATTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTTACCCG
* * * * * *
10883 AAAAG-TTTTTATCATACTTTTCGCCATAATACTTAGAAAAAAATATATAATTCAACGCCAAAAA
326 AAAAGTTTTTTCTCA-ATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAATGCCAAAAA
10947 GATT
390 GATT
10951 TAGTCGGGGC
Statistics
Matches: 2048, Mismatches: 243, Indels: 89
0.86 0.10 0.04
Matches are distributed among these distances:
967 5 0.00
968 52 0.03
969 257 0.13
970 363 0.18
971 126 0.06
972 280 0.14
973 703 0.34
974 148 0.07
975 109 0.05
976 5 0.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (969 bp):
AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGA
TTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
TCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTTTGTT
CGATGAATATAGATATTTCAAGAAGTCTTTCTACCAAAAATCATGCAAAATTGAGCCGGGGCTCC
CGGAACGCATTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTTACCCG
AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAAATATATAATTCAATGCCAAAAAG
ATTGACGGGCTTTTTACGCTTCTAATATCGTTTTTTCATTTTTTTTCTGAATTAATTTCTAATTA
AATCAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTT
CGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCGAAATTGAGCCGGGGCTCC
GGAACGCGTTTTTACCCCAAAAACCGTGATTGTTAGTACACGATTTCGGTTAAAAACTGACCCGA
AAAGTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATT
GACGTGCTTTTCAAGCTTCTAATATCATTTTTTTCATTTTTTTTCCGAATTAATTTCTAATTAAA
TCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGTTCG
ATGAAAATAGATATTTCAAGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGTCGGGGCTCCGGA
AGCATTTTTAACCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCG
Found at i:9670 original size:324 final size:323
Alignment explanation
Indices: 7646--10950 Score: 4136
Period size: 326 Copynumber: 10.2 Consensus size: 323
7636 AACTTGCTCA
* * * * *
7646 AAAAGATTTTTCTCAATTTTTCGCCATAATACTCAGAAAAAATATATAATTCAACGTCAAAAAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
* * * * * *
7711 TTGACAGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTTTCTGAATTAATTTCTAAATAAA
66 TTGACGGGCTTTTCAAGCTTCTAATATCTTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
* * * * *
7776 TCGAAACAAGATTCAGATGCTC-ATAAAAACAAATCCTTATATCCAATGTGGCTAACAGTTGGTT
131 TCGAAACAAGATTGAGATGCTCGA-AAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTT
* *
7840 CGATAAATATAGATATTTCAAGAAGTCTTT-TGTACCAAAAATCATGCA-AACTTGAGCCGGGGC
195 CGATGAATATAGATATTTCAAGGAGTCTTTCTG--CCAAAAATCATGCAGAA-TTGAGCCGGGGC
* * * *
7903 TCCGGAACGCATTTTTA--GCAAAAACCCCGTGAT-GTTAGTACACGATTTTGGCTAAAAACTTA
257 TCCGGAACGCGTTTTTACCCCAAAAA--CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
7965 CCCG
320 CCCG
* * *
7969 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA-AAAAAACCATACAATTCAACAG-CAAAAA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAA-TATATAATTCAA-TGCCAAAAA
* * * * * * * * *
8032 CATTGATGGGTTTTTCACGTTTCTAATATCGTTTTTTCATTCTTTTTCTGAATGAACTTCTAATT
64 GATTGACGGGCTTTTCAAGCTTCTAATATCTTTTTTTCATT-TTTTTCCGAATTAATTTCTAATT
* * * * *
8097 AAATC-AGAACAAGATTCAGGTGCTCGTAAAAACAAATCATTATATCCAATTTGGCTGAGATTTG
128 AAATCGA-AACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTG
* * * * *
8161 GTTCGATAAATATAGATATTTTAAGGAGTCATTCTGCCAAAAATCATGCAAAATTGAGCTGGGGC
192 GTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGCCGGGGC
* * **** * * *
8226 TCCGAAAGGCGTTTTTAGGAAAAAAAACTGTGATGGTTAGTACACGATTTCAGTTAAAAACTGAC
257 TCCGGAACGCGTTTTTA-CCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAC
*
8291 CCA
321 CCG
*** *
8294 AAAAG-TTTTT-TCAATTTTTTGCCATGGTACTCAGAAAAAATATATAATTCAATGCCAAAGAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
*
8357 TTGACGTGCTTTTCAAGCTTCT--TATCGTTTTTTTCATTTTTTTTCCGAATTAATTTCTAATTA
66 TTGACGGGCTTTTCAAGCTTCTAATATC-TTTTTTTCA-TTTTTTTCCGAATTAATTTCTAATTA
* * * *
8420 AATCGAAACAAAATTGAGATGTTCGAAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTAGT
129 AATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGT
* * *
8485 TCGATGAAAATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGC-GAAATTGAGTCGGGGCT
194 TCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAG-AATTGAGCCGGGGCT
** * **
8549 CCCGGAACGCGTTTTTA-ATCAAAAATCGTGATGGTTAGTACACGATTTCGGCTGCAAACTGACC
258 -CCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
8613 CG
322 CG
* * *
8615 AGAAGTTTTTTCTCAATTTTTTGCCATAATACTCAGAAAAAATATATAATTCAATGCCAAAAATA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
* * *
8680 TTGACGGGCTTTCCAAGCTTGTAATATCGTTTTTTACATTTTTTTCCGAATTAATTTCTAATTAA
66 TTGACGGGCTTTTCAAGCTTCTAATATC-TTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAA
* * * * * *
8745 ATCGAAACAAGATTGACATGTTCGAAAAAAACAAATCCTAACATCCAAAATTGCTGAGACTTT-G
130 ATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAATATGGCTGAGA-TTTGG
* * * * * *
8809 TTTGATGAACATAGATATTTCAAGGAGTCTTTCTACCAAAAATCATGCAAAATTAAGCTGGGGCT
193 TTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGCCGGGGCT
* * *
8874 CCAGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTTCACGATTTCGGCTGAAAACTGTCC
258 CC-GGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
8939 CG
322 CG
*
8941 AAAAGTTTTTTCTCAATTTTTTGCCACAGTACTCAGAAAAAATTATATAATTCAATGCCAAAAAG
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAA-TATATAATTCAATGCCAAAAAG
* * * *
9006 ATTGACGGGCTTTTTACGCTTCTAATATCGTTTTTCTT--TTTTTTTCTGAATTAATTTCCAATT
65 ATTGACGGGCTTTTCAAGCTTCTAATATC-TTTTT-TTCATTTTTTTCCGAATTAATTTCTAATT
*
9069 AAATCGAAACAAGATTGAGATGCTCGAAAAACACAAATCCTTATATCCAAAATGGCTGAGACTTT
128 AAATCGAAACAAGATTGAGATGCTCGAAAAA-ACAAATCCTTATATCCAATATGGCTGAGA-TTT
* * * *
9134 -CTTCGACGAACATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGC-GAAATTAAGCCGGG
191 GGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAG-AATTGAGCCGGG
* * * * *
9197 ACTCCGGGAACGCGTTTTTACCCCAAAAACCATGATTGTTAGTACACGATTCCGGTTAAAAACTG
255 GCTCC-GGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTG
9262 ACCCG
319 ACCCG
* * * * *
9267 AAATG-TTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATATAATTTAACGCTAAAAAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
* *
9331 -TGTACGTG-TTTTCAAGCTTCTAATATCATTTTTTTCATTTTTTTTCCCGAA-TAATTTCCAAT
66 TTG-ACGGGCTTTTCAAGCTTCTAATATC-TTTTTTTCA-TTTTTTT-CCGAATTAATTTCTAAT
* * * * * * *
9393 TAAATTGAAACAAGATTCAGATGCTCGTAAAAAGAAATCCTTATATCCAATGTGGTTGACATTTG
127 TAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTG
*
9458 GTTCGATGAATATAGATATTTCAA-GAGTCTTTCTGCCAAAAATCATGCAGAATTGAGTCGGGGC
192 GTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGCCGGGGC
* ** * ** * *
9522 TTCGGATGGCATTTTTA-GGCAAAAACTGTGATGGTTAGTACACGATTTCGACTAAAAACTGACC
257 TCCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
9586 CG
322 CG
* *
9588 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGCAAAAGTATATAATTCAATGCCAAAAAAG
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCC-AAAAAG
*
9653 ATTGACGGGCTTTTCAAGCTTCTCATAT-TGTTTTTTCATTTTTTTCCGAATTAATTTCTAATTA
65 ATTGACGGGCTTTTCAAGCTTCTAATATCT-TTTTTTCATTTTTTTCCGAATTAATTTCTAATTA
* * *
9717 AATCGAAACAAAATTGAGATGTTCGAAAAGAACAAATCCTTATATCCAATATGGCTGAGATTTGT
129 AATCGAAACAAGATTGAGATGCTCGAAAA-AACAAATCCTTATATCCAATATGGCTGAGATTTGG
* * * * *
9782 TTCGATTAATATAGATATTTCAAGAAGTCTTTTTGCCAAAAATCATAC-GAATTTGA-CCAAGGG
193 TTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAA-TTGAGCC-GGGG
* * *
9845 CTCCCGGAACGCGTTTTTACCCCTAAAACCGTGACGGTTAGTACACGATTTCGGCTAAAAACTTA
256 CT-CCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
9910 CCCG
320 CCCG
* *
9914 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAGAAAGTATATAATTCAATGCCAAAAAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
*
9979 TTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAA
66 TTGACGGGCTTTTCAAGCTTCTAATATC-TTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAA
* * * *
10044 ATCAAAACAAAATTGAGATGTTCGAAAAGAACAAATCCTTATATCCAATATGGTTGAGATTTGGT
130 ATCGAAACAAGATTGAGATGCTCGAAAA-AACAAATCCTTATATCCAATATGGCTGAGATTTGGT
* * *
10109 TCGATTAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATAC-GAATTTGAGCCGGGGCT
194 TCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAA-TTGAGCCGGGGCT
* *
10173 CCTGGAACGCGTTTTTACCCCTAAAACCGTGAT-G---GTACACGATTTCGGCTAAAAACTTACC
258 CC-GGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
10234 CG
322 CG
10236 AAAAGTTTTTTCTCAA-TTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
* *
10300 TTGACGGGTTTTTCAAGCTTCTAATATCATTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
66 TTGACGGGCTTTTCAAGCTTCTAATATCTTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
*
10365 TCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCC-ATAATAGCTGAGACTTT-G
131 TCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAAT-ATGGCTGAGA-TTTGG
* * * * * * * *
10428 TTCGATGAACATAAATATTTCAAAGAGTCTTTCAGCCAAAAATCATGCAAAACTGAGTCGGGACT
193 TTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGCCGGGGCT
* *
10493 CCCGAAACACGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
258 -CCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
10558 CG
322 CG
* * *
10560 AAAAGTTTCTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTTAACGCCAAAAAGA
1 AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
* * * * *
10625 TTGATGGGTTTTTCAAACTTCTAATATCGTTTTTTCA-TTTTTTCCGAATTAATTTTTAATTAAA
66 TTGACGGGCTTTTCAAGCTTCTAATATCTTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
* *
10689 TCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTAT-GT
131 TCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAATATGGCTGAGA-TTTGGT
* * * * *
10753 TCGATGAATATAAATATTTCAAGGAGTCTTTCTCCCAAAAATCATGCAAAACTGAGCCGAGGCTC
194 TCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGCCGGGGCT-
* * * *
10818 CCGAAACACATTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT-AAAACTTACCC
258 CCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCC
10882 G
323 G
* * * * * *
10883 AAAAG-TTTTTATCATACTTTTCGCCATAATACTTAGAAAAAAATATATAATTCAACGCCAAAAA
1 AAAAGTTTTTTCTCA-ATTTTTTGCCACAATACTCAG-AAAAAATATATAATTCAATGCCAAAAA
10947 GATT
64 GATT
10951 TAGTCGGGGC
Statistics
Matches: 2638, Mismatches: 277, Indels: 133
0.87 0.09 0.04
Matches are distributed among these distances:
319 2 0.00
320 159 0.06
321 183 0.07
322 305 0.12
323 433 0.16
324 562 0.21
325 364 0.14
326 574 0.22
327 55 0.02
328 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (323 bp):
AAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA
TTGACGGGCTTTTCAAGCTTCTAATATCTTTTTTTCATTTTTTTCCGAATTAATTTCTAATTAAA
TCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTC
GATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCG
GAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCG
Found at i:10448 original size:646 final size:644
Alignment explanation
Indices: 7630--10950 Score: 4192
Period size: 646 Copynumber: 5.1 Consensus size: 644
7620 AGCTCGATCA
* * * * * *
7630 GCTAAAAACTTGCTCAAAAAGATTTTTCTCAATTTTTCGCCATAATACTCAGAAAAAATATATAA
1 GCTAAAAACTTACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAA
* * * * * *
7695 TTCAACGTCAAAAAGATTGACAGGCTTTTCACGCTTCTAATATCGTTTTTTCAATTTTTTCTGAA
66 TTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAA
* * * *
7760 TTAATTTCTAAATAAATCGAAACAAGATTCAGATGCTC-ATAAAAACAAATCCTTATATCCAATG
131 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAATA
* * * * *
7824 TGGCTAACAGTTGGTTCGATAAATATAGATATTTCAAGAAGTCTTT-TGTACCAAAAATCATGC-
196 TGGCTGAGA-TTTGTTCGATGAACATAGATATTTCAAGAAGTCTTTCTG--CCAAAAATCATGCG
* *
7887 AAACTTGAGCCGGGGCT-CCGGAACGCATTTTTA--GCAAAAACCCCGTGAT-GTTAGTACACGA
258 AAA-TTGAGCC-GGGCTCCCGGAACGCGTTTTTACCCCAAAAA--CCGTGATGGTTAGTACACGA
* * *
7948 TTTTGGCTAAAAACTTACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA-AAAAAACC
319 TTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAA-T
* * * * * *
8012 ATACAATTCAACAG-CAAAAACATTGATGGGTTTTTCACGTTTCTAATATCGTTTTTTCATTCTT
383 ATATAATTCAAC-GCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATT-TT
* * * * * * *
8076 TTTCTGAATGAACTTCTAATTAAATC-AGAACAAGATTCAGGTGCTCGTAAAAACAAATCATTAT
446 TTTCCGAATTAATTTCTAATTAAATCGA-AACAAGATTGAGATGCTCGAAAAAACAAATCCTTAT
* * * *
8140 ATCCAATTTGGCTGAGATTTGGTTCGATAAATATAGATATTTTAAGGAGTCATTCTGCCAAAAAT
510 ATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAAT
* * * **** *
8205 CATGCAAAATTGAGCTGGGGCTCCGAAAGGCGTTTTTAGGAAAAAAAACTGTGATGGTTAGTACA
575 CATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTA-CCCCAAAAACCGTGATGG-T-GTACA
*
8270 CGATTTCA
637 CGATTTCG
* * * ***
8278 GTTAAAAACTGACCCAAAAAG-TTTTT-TCAATTTTTTGCCATGGTACTCAGAAAAAATATATAA
1 GCTAAAAACTTACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAA
* *
8341 TTCAATGCCAAAGAGATTGACGTGCTTTTCAAGCTTCT--TATCGTTTTTTTCATTTTTTTTCCG
66 TTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCG-TTTTTTCA-TTTTTTTCCG
* * *
8404 AATTAATTTCTAATTAAATCGAAACAAAATTGAGATGTTCG-AAAAAACAAATCCTTAAATCCAA
129 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAA
* * *
8468 TATGGCTGAGATTTAGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCG
194 TATGGCTGAGATTT-GTTCGATGAACATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGCG
* ** *
8533 AAATTGAGTCGGGGCTCCCGGAACGCGTTTTTA-ATCAAAAATCGTGATGGTTAGTACACGATTT
258 AAATTGAG-CCGGGCTCCCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTT
** * *
8597 CGGCTGCAAACTGACCCGAGAAGTTTTTTCTCAATTTTTTGCCATAATACTCAGAAAAAATATAT
322 CGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATAT
* * * *
8662 AATTCAATGCCAAAAATATTGACGGGCTTTCCAAGCTTGTAATATCGTTTTTTACATTTTTTTCC
387 AATTCAACGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTT-CATTTTTTTCC
* * * *
8727 GAATTAATTTCTAATTAAATCGAAACAAGATTGACATGTTCGAAAAAAACAAATCCTAACATCCA
451 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCA
* * * * *
8792 AAATTGCTGAGACTTT-GTTTGATGAACATAGATATTTCAAGGAGTCTTTCTACCAAAAATCATG
515 ATATGGCTGAGA-TTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATG
* * *
8856 CAAAATTAAGCTGGGGCTCCAGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTTCACGAT
579 CAAAATTGAGCCGGGGCTCC-GGAACGCGTTTTTACCCCAAAAACCGTGATGG-T-GTACACGAT
8921 TTCG
641 TTCG
* *
8925 GCTGAAAACTGT-CCCGAAAAGTTTTTTCTCAATTTTTTGCCACAGTACTCAGAAAAAATTATAT
1 GCTAAAAACT-TACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAA-TATAT
* * * *
8989 AATTCAATGCCAAAAAGATTGACGGGCTTTTTACGCTTCTAATATCG-TTTTTCTTTTTTTTTCT
64 AATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTC-ATTTTTTTCC
* *
9053 GAATTAATTTCCAATTAAATCGAAACAAGATTGAGATGCTCGAAAAACACAAATCCTTATATCCA
128 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCA
* * * *
9118 AAATGGCTGAGACTTTCTTCGACGAACATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGC
193 ATATGGCTGAGA-TTTGTTCGATGAACATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGC
* * * *
9183 GAAATTAAGCCGGGACTCCGGGAACGCGTTTTTACCCCAAAAACCATGATTGTTAGTACACGATT
257 GAAATTGAGCCGGG-CTCCCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATT
* * * *
9248 CCGGTTAAAAACTGACCCGAAATG-TTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATA
321 TCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATA
* * * *
9312 TAATTTAACGCTAAAAAGA-TGTACGTG-TTTTCAAGCTTCTAATATCATTTTTTTCATTTTTTT
386 TAATTCAACGCCAAAAAGATTG-ACGGGCTTTTCAAGCTTCTAATATC-GTTTTTTCA-TTTTTT
* * * * *
9375 TCCCGAA-TAATTTCCAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAAGAAATCCTTATAT
448 T-CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATAT
* * *
9439 CCAATGTGGTTGACATTTGGTTCGATGAATATAGATATTTCAA-GAGTCTTTCTGCCAAAAATCA
512 CCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCA
* * * ** * ** *
9503 TGCAGAATTGAGTCGGGGCTTCGGATGGCATTTTTA-GGCAAAAACTGTGATGGTTAGTACACGA
577 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTACCCCAAAAACCGTGATGG-T-GTACACGA
9567 TTTCG
640 TTTCG
* * * *
9572 ACTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGCAAAAGTATATAA
1 GCTAAAAACTTACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAA
* *
9637 TTCAATGCCAAAAAAGATTGACGGGCTTTTCAAGCTTCTCATATTGTTTTTTCATTTTTTTCCGA
66 TTCAATGCC-AAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGA
* * *
9702 ATTAATTTCTAATTAAATCGAAACAAAATTGAGATGTTCGAAAAGAACAAATCCTTATATCCAAT
130 ATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAT
* * * *
9767 ATGGCTGAGATTTGTTTCGATTAATATAGATATTTCAAGAAGTCTTTTTGCCAAAAATCATACGA
195 ATGGCTGAGATTTG-TTCGATGAACATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGCGA
* * *
9832 ATTTGA-CCAAGGGCTCCCGGAACGCGTTTTTACCCCTAAAACCGTGACGGTTAGTACACGATTT
259 AATTGAGCC--GGGCTCCCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTT
* * *
9896 CGGCTAAAAACTTACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAGAAAGTATAT
322 CGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATAT
*
9961 AATTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCCATTTTTTTCC
387 AATTCAACGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTT-CATTTTTTTCC
* * *
10026 GAATTAATTTCTAATTAAATCAAAACAAAATTGAGATGTTCGAAAAGAACAAATCCTTATATCCA
451 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAA-AACAAATCCTTATATCCA
* * * *
10091 ATATGGTTGAGATTTGGTTCGATTAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATAC
515 ATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGC
* * *
10156 GAATTTGAGCCGGGGCTCCTGGAACGCGTTTTTACCCCTAAAACCGTGAT-G-GTACACGATTTC
580 AAAATTGAGCCGGGGCTCC-GGAACGCGTTTTTACCCCAAAAACCGTGATGGTGTACACGATTTC
10219 G
644 G
10220 GCTAAAAACTTACCCGAAAAGTTTTTTCTCAA-TTTTTGCCACAATACTCAGAAAAAATATATAA
1 GCTAAAAACTTACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAA
* *
10284 TTCAATGCCAAAAAGATTGACGGGTTTTTCAAGCTTCTAATATCATTTTTTCATTTTTTTCCGAA
66 TTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAA
10349 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCC-ATA
131 TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAAT-
* * * *
10413 ATAGCTGAGACTTTGTTCGATGAACATAAATATTTCAA-AGAGTCTTTCAGCCAAAAATCATGCA
195 ATGGCTGAGA-TTTGTTCGATGAACATAGATATTTCAAGA-AGTCTTTCTGCCAAAAATCATGCG
* * * *
10477 AAACTGAGTCGGGACTCCCGAAACACGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTT
258 AAATTGAGCCGGG-CTCCCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTT
*
10542 CGGCTAAAAACTGACCCGAAAAGTTTCTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATAT
322 CGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATAT
* * * *
10607 AATTTAACGCCAAAAAGATTGATGGGTTTTTCAAACTTCTAATATCGTTTTTTCA-TTTTTTCCG
387 AATTCAACGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCG
*
10671 AATTAATTTTTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAA
452 AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAACAAATCCTTATATCCAA
* * * *
10736 AATGGCTGAGACTAT-GTTCGATGAATATAAATATTTCAAGGAGTCTTTCTCCCAAAAATCATGC
516 TATGGCTGAGA-TTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGC
* * * * *
10800 AAAACTGAGCCGAGGCTCCCGAAACACATTTTTACCCCAAAAACCGTGATGGTTAGTACACGATT
580 AAAATTGAGCCGGGGCT-CCGGAACGCGTTTTTACCCCAAAAACCGTGATGG-T-GTACACGATT
10865 TCG
642 TCG
* * * * *
10868 GCT-AAAACTTACCCGAAAAG-TTTTTATCATACTTTTCGCCATAATACTTAGAAAAAAATATAT
1 GCTAAAAACTTACCCGAAAAGTTTTTTCTCA-ATTTTTTGCCACAATACTCAG-AAAAAATATAT
*
10931 AATTCAACGCCAAAAAGATT
64 AATTCAATGCCAAAAAGATT
10951 TAGTCGGGGC
Statistics
Matches: 2328, Mismatches: 282, Indels: 125
0.85 0.10 0.05
Matches are distributed among these distances:
644 162 0.07
645 57 0.02
646 685 0.29
647 526 0.23
648 237 0.10
649 175 0.08
650 202 0.09
651 217 0.09
652 67 0.03
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (644 bp):
GCTAAAAACTTACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAA
TTCAATGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAA
TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAACAAATCCTTATATCCAATA
TGGCTGAGATTTGTTCGATGAACATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGCGAAA
TTGAGCCGGGCTCCCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTTAGTACACGATTTCGGC
TAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
CAACGCCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTCCGAATT
AATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGG
CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAATT
GAGCCGGGGCTCCGGAACGCGTTTTTACCCCAAAAACCGTGATGGTGTACACGATTTCG
Found at i:11271 original size:499 final size:498
Alignment explanation
Indices: 10513--11449 Score: 1348
Period size: 499 Copynumber: 1.9 Consensus size: 498
10503 GTTTTTACCC
* *
10513 CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTCTTCTCAATT
1 CAAAAACCATGATGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAGTTTCTTCTCAATT
* * * *
10578 TTTTGCCACAATACTCAGAAAAAATATATAATTTAACGCCAAAAAGATTGATGGGTTTTTCAAAC
66 TATTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCAAAC
** * *
10643 TTCTAATATCGTTTTTTCATTTTTTCCGAATTAATTTTTAATTAAATCGAAACAAGATTGAGATG
131 TTCTAATATCGTTTTTTCATTTTTTCCGAATTAATTTCCAATTAAATCGAAAAAAGATTCAGATG
*
10708 CTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGAGACTATGTTCGATGAATATAAATATTTC
196 CTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGACACTATGTTCGATGAATATAAATATTTC
*
10773 AAGGAGTCTTTCTCCCAAAAATCATGCAAAACTGAGCC-GAGGCTCCCGAAACACATTTTTACCC
261 AAGGAGTCTTTCTCCCAAAAATCATGCAAAACTGAGCCAG-GGCT-CCGAAACACATTATTA-CC
* * *
10837 CAAAAACCGTGATGGTTAGTACACGATTTCGGCT-AAAACTTACCCGAAAAGTTTTTATCAT-AC
323 CAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAGTTTTT-TC-TCAA
* *
10900 TTT-TCGCCATAATACTTAG-AAAAAAATATATAATTCAACGCCAAAAAGATTTAGTCGGGGCTC
386 TTTCTCGCCACAATACTCAGAAAAAAAATATATAATTCAACGCCAAAAAGATTTAGTCGGGGCTC
10963 CTGGACGCGTTGCAAATTTGAGACGGGGCTCTAGAACGCGTTATTAGT
451 CTGGACGCGTTGCAAATTTGAGACGGGGCTCTAGAACGCGTTATTAGT
* * * * *
11011 CAAAAACTATGATGGTTAGTACACAATTTCGGCTAAAAACTGACCCAGTAATGTTTTTTTTCAAT
1 CAAAAACCATGATGGTTAGTACACAATTTCGGCTAAAAACTGACCC-GAAAAGTTTCTTCTCAAT
** * * *
11076 TTATTGTTACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAG
65 TTATTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCAAA
11141 CTTCTAATATCGTTTTTTCATTTTTTTCCGAATTAATTTCCAATTAAATCGAAAAAAGATTCAGA
130 CTTCTAATATCGTTTTTTCA-TTTTTTCCGAATTAATTTCCAATTAAATCGAAAAAAGATTCAGA
* ** * *
11206 TGCTCG-TAAAAACAAATCCTTATATCCAATGTGGCTGACA-TTTGGTTCGATGAATATAGATAT
194 TGCTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGACACTAT-GTTCGATGAATATAAATAT
* * * * * * *
11269 TTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGCCAGGGCTCCGGAACGCGTTATTAGC
258 TTCAAGGAGTCTTTCTCCCAAAAATCATGCAAAACTGAGCCAGGGCTCCGAAACACATTATTACC
* *
11334 CAAAAACGGTGATGGTTAGTACACAATTTCGGCTAAAAACTGACCCGGAAAGTTTTTTCTCAATT
323 CAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATT
* ** *
11399 TCTTGTTACAATACTCAGAAAAAAAATATATAATTCAATGCCAAAAAGATT
388 TCTCGCCACAATACTCAGAAAAAAAATATATAATTCAACGCCAAAAAGATT
11450 GACGTGCTTT
Statistics
Matches: 386, Mismatches: 45, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
496 1 0.00
497 39 0.10
498 88 0.23
499 211 0.55
500 47 0.12
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (498 bp):
CAAAAACCATGATGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAGTTTCTTCTCAATT
TATTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCAAAC
TTCTAATATCGTTTTTTCATTTTTTCCGAATTAATTTCCAATTAAATCGAAAAAAGATTCAGATG
CTCGAAAAAAACAAATCCTTATATCCAAAATGGCTGACACTATGTTCGATGAATATAAATATTTC
AAGGAGTCTTTCTCCCAAAAATCATGCAAAACTGAGCCAGGGCTCCGAAACACATTATTACCCAA
AAACCGTGATGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTCT
CGCCACAATACTCAGAAAAAAAATATATAATTCAACGCCAAAAAGATTTAGTCGGGGCTCCTGGA
CGCGTTGCAAATTTGAGACGGGGCTCTAGAACGCGTTATTAGT
Found at i:11584 original size:325 final size:323
Alignment explanation
Indices: 10973--12489 Score: 2123
Period size: 325 Copynumber: 4.7 Consensus size: 323
10963 CTGGACGCGT
* * ** * **
10973 TGCAAATTTGAGACGGGGCTCTAGAACGCGTTATTAGTCAAAAACTATGATGGTTAGTACACAAT
1 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
* * * *
11038 TTCGGCTAAAAACTGACCCAGTAATGTTTTTTTTCAATTTATTGTTACAATACTCAGAAAAAATA
66 TTCGGCTAAAAACTGACCC-GGAAAGTTTTTTCTCAATTTTTTGTTACAATACTCAGAAAAAATA
11103 TATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCA-TTTTTT
130 TATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTT
* * *
11167 TCCGAATTAATTTCCAATTAAATCGAAAAAAGATTCAGATGCTCGTAAAAACAAATCCTTATATC
195 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTATATC
11232 CAATGTGGCTGACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCA
260 CAATGTGGCTGACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCA
*
11296 TGCAAAATTGAGCCAGGGCTCCGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
1 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
*
11361 TTCGGCTAAAAACTGACCCGGAAAGTTTTTTCTCAATTTCTTGTTACAATACTCAGAAAAAAAAT
66 TTCGGCTAAAAACTGACCCGGAAAGTTTTTTCTCAATTTTTTGTTACAATACTCAG--AAAAAAT
*
11426 ATATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAGTTTCTAATATCGTTTTTTCATTTTTT
129 ATATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTT
*
11491 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGATCGTAAAAACAAATCCTTATAT
194 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTATAT
* *
11556 CCAATGTGGCTGACATTTGGTTCGATGAATATAGATATTTTAAGGAGTCTTTGGGCCAAAAATCA
259 CCAATGTGGCTGACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCA
*
11621 TGCAAAATTGAGCCGGGGCTCAGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
1 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
** * *
11686 TTCGGCTAAAAACTGACCTAGAAA-ATTTTTCTCAATTTTTTGTTACAATAGTCAGAAAAAATAT
66 TTCGGCTAAAAACTGACCCGGAAAGTTTTTTCTCAATTTTTTGTTACAATACTCAGAAAAAATAT
* * *
11750 ATAATTCAATGCCAAAAAGATTGGCGTGCTTTTCAAGCTTATAATATCGTTTTTTCA-TTTTTTC
131 ATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTT
11814 CCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTATATCC
196 CCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTATATCC
* *
11879 AATGTGGCTGACATTTGGTTCGATGAATATAGATATATCAAGGAGTCTTTGTACCAAAAATCA
261 AATGTGGCTGACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCA
* * * * * *
11942 TGCAAAATTGAGTCGGGGCTCCGGAACACGTTTTTAACTAAAAAC---------T-G-ACACGAT
1 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
* * **
11996 TTCGGCTACAAATTGACCC-GAAACGTTTTTTCTCAATTTTTTACTACAATACTCAGAAAAAAAA
66 TTCGGCTAAAAACTGACCCGGAAA-GTTTTTTCTCAATTTTTTGTTACAATACTCAG--AAAAAA
* * * * * *
12060 CATATAATTTATTGCCAAAAAGATTGACGGGTTTTTCAAGTTTCTAATATCGTTTTTTC-TCTTT
128 TATATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCAT-TTT
* * * *
12124 TTTTCCCGAATTAATTTCTAATTAAATCAAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTA
192 TTTT-CCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTA
* * * * *
12189 TATCCAATATGGCTGAGATTTGGTACGATAAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAA
256 TATCCAATGTGGCTGACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAA
*
12254 ACA
321 TCA
* * ** * * * *
12257 TGCAGAATTGAGTCGGGGCTCCGGAACGTATTTTTAGACAAAAACCGTGATGGTTAGTACACGAT
1 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
* * * * * ** *
12322 ATCGACTAAAAACTAACCCGTAAAAGTTTTTTTTTTCAATTTTTTGCCACAATATTCAGAAAAAA
66 TTCGGCTAAAAACTGACCCG-GAAAG--TTTTTTCTCAATTTTTTGTTACAATACTCAGAAAAAA
* *
12387 TATATAATTTAACT-CCAAAAAGATTGACGGGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTT
128 TATATAATTCAA-TGCCAAAAAGATTGACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCA-TTT
*
12451 TTTTTCCGAATTAATTTCTAATTAAATCGAAATAAGATT
191 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT
12490 GA
Statistics
Matches: 1073, Mismatches: 93, Indels: 52
0.88 0.08 0.04
Matches are distributed among these distances:
309 4 0.00
310 22 0.02
311 28 0.03
312 1 0.00
313 57 0.05
314 6 0.01
315 154 0.14
321 168 0.16
322 96 0.09
323 76 0.07
324 94 0.09
325 215 0.20
326 21 0.02
327 92 0.09
328 11 0.01
329 28 0.03
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (323 bp):
TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTATTAGCCAAAAACGGTGATGGTTAGTACACAAT
TTCGGCTAAAAACTGACCCGGAAAGTTTTTTCTCAATTTTTTGTTACAATACTCAGAAAAAATAT
ATAATTCAATGCCAAAAAGATTGACGTGCTTTTCAAGCTTCTAATATCGTTTTTTCATTTTTTTT
CCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTATATCC
AATGTGGCTGACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCA
Done.