Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015187.1 Corchorus capsularis cultivar CVL-1 contig15208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33281

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3567
335
10.6
335
76
8
3019
36
16
15
31
1.90
1--3450
669
5.1
666
82
6
3526
36
16
15
31
1.91
4367--4395
9
3.3
9
95
4
51
55
0
0
44
0.99
11872--11898
6
4.5
6
100
0
54
18
0
37
44
1.50
12873--12915
22
2.0
22
90
0
68
11
44
27
16
1.82
13910--13955
5
9.2
5
100
0
92
19
0
41
39
1.52
15081--15160
2
40.5
2
79
2
81
41
3
2
52
1.33
15251--15280
2
15.5
2
93
6
53
50
0
0
50
1.00
17063--17089
2
13.5
2
100
0
54
48
0
0
51
1.00
25307--25402
48
2.0
48
100
0
192
43
6
18
31
1.75
26793--26819
5
5.4
5
100
0
54
18
0
0
81
0.69
27227--27276
3
16.7
3
93
0
82
30
0
2
68
1.01
28647--28685
2
21.0
2
85
15
57
48
0
0
51
1.00
30596--30668
3
25.0
3
91
5
123
32
1
0
65
1.01
32898--32930
13
2.5
13
95
0
57
21
9
24
45
1.80

Tables:   1

The End!