Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015189.1 Corchorus capsularis cultivar CVL-1 contig15210, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 41151
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:41067 original size:4 final size:4

Alignment explanation


    Indices: 41060--41092  Score: 66
    Period size: 4  Copynumber: 8.2  Consensus size: 4

      41050 ATATATATAT

                                                     
      41060 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG A
          1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG A

      41093 GAGAGAGAGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24


Consensus pattern (4 bp):   
ATAG

Found at i:41097 original size:2 final size:2

Alignment explanation


    Indices: 41090--41151  Score: 117
    Period size: 2  Copynumber: 31.5  Consensus size: 2

      41080 ATAGATAGAT

                                                                          
      41090 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                                           
      41132 AG AG AG A- AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG A


Statistics
Matches: 59,  Mismatches: 0, Indels: 2
        0.97            0.00        0.03

Matches are distributed among these distances:
   1    1  0.02
   2   58  0.98

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
AG

Done.